Bput010852.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015469.1:25870854-25873816[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.019 1.7 10.2 0.6 2 23 329 350 328 350 0.96 2 10 0.00053 0.047 15.1 0.4 1 23 354 377 354 377 0.93 3 10 0.0046 0.41 12.1 5.8 1 23 389 411 389 411 0.98 4 10 1.8e-06 0.00016 22.8 0.5 1 23 419 441 419 441 0.97 5 10 1e-05 0.00092 20.5 2.9 1 23 447 469 447 469 0.94 6 10 2.7e-05 0.0024 19.2 2.8 1 23 475 497 475 497 0.98 7 10 0.00043 0.038 15.4 7.3 1 23 503 525 503 525 0.99 8 10 0.043 3.8 9.1 0.9 3 23 533 553 531 553 0.95 9 10 6.5e-06 0.00058 21.1 4.6 1 23 559 581 559 581 0.98 10 10 1.3e-05 0.0012 20.1 1.9 1 23 587 609 587 610 0.96
Sequence Information
- Coding Sequence
- ATGGCGTACAGCTGGTCTGATGTGTGTCGAGTATGTATGAGACGCGAGTGCGAGGTAGAAATGATCTCTGTCTTCCAAAATAATTCAGTTGCTGCCAAAATCCTATTTGTCACCGATCTACAGGTGAAACATGGAGACGGCCTACCCTCTGCGATTTGCAAGCGTTGTAATCTTCGTTTAAACTCGGCTCATAAGTTCAAGCAACAAAGTATTGCGTCGGACATTGCGTTCCGTCAGGATTACTACCAGATAACAACTGAGGATGACGTACCGCTCATGGACATCGAAACCATCAAAAGTCAAGTAAACTTTCGCCTCGGAGATGGAATCATTGACCCGGAACGCAATTCCTTCCAAACTCAACAGACATCTTACGACACGGTCTGTACATCACCTTTTTCGCAGTTCAACCAAAACGAAGATGTTAAATTTACTATTGATGATATTGATTATATTCAAACAATGAGTGAGAAACGTATATTTCCCACGATCGTCGAAGAAGAAAAGGTTTACGACGATCTGAATACAAACGTGTGCGAGTCGTATGGTGAAAACTTGGAACTTAATATCAAAAGCGAACCAAGCGTGACAGAAGAACATCAAACTATGGATGATGTTTTAGATCTAAATTCAATAATGTGTGATCCAGTTTCCGAATCAGCGGAGGAGAATTTCGAACGTCGTTTCGTCGATGAATGTGGAGTTGTTTACGAGATGAACAACGGCTGTTTCGAGATGTTGGTTTTGACGGACGATAACGACCCGCTAACGGTTGGTACGGTTAAAAATGAAACCAATCCTAGTCGATTAAGAAAAATGAAACACAATCCAAAGAAAGTAGTAATCGAAACAATAAATTCGGTAGGCCTAATGGAAGATAACATGGTTTCCGTTTCGGAAGTCGTGGAAAAGGAAACCAATAGAAGATCTCGAGCGAGAAAACAAAAGTCTGTAAAAGTAACGGTACCAACAGAAGAAATTATGCAATGTGATATATGTTCGAAATCATTTCTCGGTTCAAAACGATTAGCTAAACATTACCAAATACATAAAAAGGAATTTGCTTGTCCAATTTGTACTCTTGTTTTCAATAGTAAAAGAACCATGCAACGTCATTCAGAAAGGGTGCACAAACAGAACCTGAACCTGGGCGTCAACGGCCGTCACAAATGTGACAAATGTGATCAATCCTTTCATTTTAAAATAGCATTATTTTCACATCTCAAATCTCACGTCGTTCAACCACCGCAGACGCATCCGTGTAACGTTTGCGATAAAGTATTCACGAAACGTGCCAACCTAGTTCAACATTTGTTGGTTCACTCGACGGAAAGATCGTTCGTTTGTACGTATTGCGATGCTACTTTCAAATATAAATCGCATTTAAATCGGCATGAAGATCTTCATTCCGGGATTAAGAATTTCCAGTGTTCCGCTTGCGGAAAATGTTTTGCGCGAAACAATTTATTGAAAATGCATTTTCGCATTCATAGCGGCGAAAAGCCTTACAAGTGTACGCGGTGCGATCGTGCTTTTTCTAATCACACGCATTACAATTTGCACTTGAAACGTCACGACGGATTGAAACCGCACTTGTGCGAACTGTGTGGCGCCAGCTTTCTGACGACGTCCATCTTGAAACGACACTTGCGGGTCCACACGGGCGAAAAGCCGTACCCTTGTGATTTGTGCGGCGTGAAATTCAGACGAAGACATCATTTGCGTTCGCATTTACGTTCTCACGCGGGGGAGAAAAGTTTTGAGTGCGCTAATTGTCAGCGAAAGTTTTCTCAAAAAGTCTCGTTAATTGCTCATTTAAGAAATCATCACTTATATTAG
- Protein Sequence
- MAYSWSDVCRVCMRRECEVEMISVFQNNSVAAKILFVTDLQVKHGDGLPSAICKRCNLRLNSAHKFKQQSIASDIAFRQDYYQITTEDDVPLMDIETIKSQVNFRLGDGIIDPERNSFQTQQTSYDTVCTSPFSQFNQNEDVKFTIDDIDYIQTMSEKRIFPTIVEEEKVYDDLNTNVCESYGENLELNIKSEPSVTEEHQTMDDVLDLNSIMCDPVSESAEENFERRFVDECGVVYEMNNGCFEMLVLTDDNDPLTVGTVKNETNPSRLRKMKHNPKKVVIETINSVGLMEDNMVSVSEVVEKETNRRSRARKQKSVKVTVPTEEIMQCDICSKSFLGSKRLAKHYQIHKKEFACPICTLVFNSKRTMQRHSERVHKQNLNLGVNGRHKCDKCDQSFHFKIALFSHLKSHVVQPPQTHPCNVCDKVFTKRANLVQHLLVHSTERSFVCTYCDATFKYKSHLNRHEDLHSGIKNFQCSACGKCFARNNLLKMHFRIHSGEKPYKCTRCDRAFSNHTHYNLHLKRHDGLKPHLCELCGASFLTTSILKRHLRVHTGEKPYPCDLCGVKFRRRHHLRSHLRSHAGEKSFECANCQRKFSQKVSLIAHLRNHHLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -