Bput013040.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:25442526-25457156[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.2 1.9e+02 3.7 3.5 1 21 27 47 27 48 0.91 2 20 0.00012 0.011 17.1 0.3 2 21 55 74 54 75 0.94 3 20 3.3 3e+02 3.1 3.0 1 21 96 116 96 117 0.87 4 20 0.0022 0.19 13.1 0.2 2 21 124 143 123 144 0.94 5 20 0.013 1.2 10.7 4.5 1 21 165 185 165 186 0.96 6 20 0.0014 0.12 13.8 7.6 2 20 193 211 192 213 0.93 7 20 2.3e-05 0.002 19.4 1.8 3 22 221 240 220 240 0.96 8 20 0.22 20 6.8 4.9 1 21 264 284 264 285 0.94 9 20 0.00072 0.064 14.7 3.1 2 21 292 311 291 312 0.94 10 20 0.035 3.1 9.4 0.6 1 21 345 365 345 366 0.95 11 20 0.00077 0.068 14.6 0.3 2 21 373 392 372 393 0.94 12 20 0.21 19 6.9 0.3 2 15 400 413 399 415 0.83 13 20 0.012 1.1 10.8 1.2 2 21 433 452 432 453 0.93 14 20 0.0002 0.018 16.4 1.4 1 21 470 490 470 491 0.96 15 20 0.0002 0.017 16.4 3.1 3 21 499 517 497 518 0.95 16 20 0.43 38 5.9 4.4 1 21 547 567 547 568 0.93 17 20 0.00016 0.014 16.8 5.4 2 21 575 594 574 595 0.94 18 20 3.2 2.9e+02 3.2 1.9 2 14 602 614 601 616 0.88 19 20 0.27 24 6.6 0.1 2 11 634 643 633 647 0.91 20 20 3.7e-05 0.0033 18.7 1.3 1 21 660 680 660 681 0.95
Sequence Information
- Coding Sequence
- ATGCTCTGCAGTTGCTGGTGTCCAGATTTGTGCGATGTGAACATCATCATGAGCGCTGATCCGGCCGGTGGGAAACCGTTCCAGTGTCTCCAGTGCAACAGGCTGTTCAGTGATAAACCTGAGTGCACGTATCACTTGAGACATGAGTGTGGCAAGATACTTCAGTGTCCAAACTGTGACAAAACATTCAACGGAAAACGTTATTTGATATCGCATGTGAGGTATGAGTGTGATTTGTACGATGTGAACATCAACATGAGCGTTGATTTGACAAGTGCGAAACCGTTCCAGTGTCTCCAGTGCAACAGGCTGTTCAGTGATAAACCAGGGTGCACGTATCACCTGAGGCATGAGTGTGGCAAGATACTCCGGTGTCCAAACTGTGACAAAACAATCAACGGGAAACGAAATCTCATGACACACATTAACTATGAGTGTGATTTCATTGGATGGGTTCACTCTACTAATGCTGTTCAAGGCATGCCTCGTAGCTATCGGTGTTCGAAGTGCGATAAGAGTTTCGGATTGAAGAGCGACTGCACTTCTCACATGCGACACGAATGCGGAAAACAACTCAGGTGTCCCAGATGCAACAAGTGCTTCAGTCACCAGAGCAATCTCAGCACGCACAAGCATCACGAATGTGGTCAAGTGCCGTTGTGTCCAGCATGTGGCAAATGCTTCAGCCTGAAAAGAAATCTCACGAGACATATGAAAACAAAATGGATCGTAGAAATGTTTCTCCCGGAGTTCAGCATGAGCACCTCGTTTCAAGGTGTCCCTCACCGCTACCAATGTCCCACGTGCTCCAAGTGCTACCGACTCAAGGGCGACTGCACGGCGCATATCAAGCACGAGTGTGGTAAAGATCTCGTCTGCCCGACCTGCTCGAAACGGTTCAAGCAGCGATGTAACTTGAGCACACACATTAATCACGAGTGTGGTAAAGTGTTGTCTTGTCCAAAATGTGATGATAATAATGTACCGCTTTCCTCCAAGTCTATTGCCAGTGTTGTCACGGCTCCTCAACGCTACCCGTGTCCGAATTGCACGAAAAGCTACCAAGCAATGAAAACGCTGTCCTATCATATGCGTCATGAGTGCGGCAAGGTCTTGCAATGTCCGACCTGCCCCCAACGGTTCAATCTGAAGACTCAGTTAACCACGCATATCAACTACGAGTGTGGAAAATCCCTCGTTTGTCATTATTGTAATAAGCAATTCTTTCGTGGTTCACATTGGTTGTTCCCCGGCAGCCATCCTGTTGCAACCAGCCCCATCACGTCTGAACGTATCCAATGTCAGGTCTGCAATAAGATCTTCCGGCTGAAGAACCACCTGACGTTCCACATGAAGCTTGCCAAGGTACTCAATTACTTCACTCGTCCTCGAAGGAAAGCAACTAGTTTTCAGTGTCCAAATTGTTTCAAGAAGTTCAAGGCGAAGTCGACTTTGATGACTCACACTCGATACGAATGCGGCAAGTGTCTACTTTGTCCGACTTGCGGCAAGAGCTTCAAGTTCAGGTCCACTTTGTGTACCCACGTGAGGCACGAATGCGGCAAAGAACTAATCTGTACCGTTGCCTGGTCGCTTCCACTAATAAGTAGAAACACGCTTCTCGGCGAGTTGTCACGCCATCACTGTCCCACTTGCCAGCGCAGCTACAAGGAGAAGAAAGACATGCTCTACCACTTGAAACACGAGTGTGGTCAAGATCTGAGATGTCCGACTTGTAACAAGCATTTCCAGAGGAAATCGCATCTGAAAACGCATATCAAACACGAGTGTGGTCAAGTGTTGTGTTGTCCGAATTGCCAGAAGCGTTATAAGTTTAAATCGCCAATGTCGCCGATGCTCAGGCCGGTTATCAGAGCCAAGGATCCGTCTACTCGCCTCCAGTGCCCCAACTGCAATCGAACTTTCAGCGCCGAACCGTCAAGGAAATTCCATCTGAAGCACGAGTGTGGAAAACGCTTCCAGTGTACCTCATGCAAGAAGAGTTACAAGACGAAAGGCAATCTCACAGCACATGTTAATCACGATGAATGCGTGTCTCTCCGTGCCCGAGTCAAGTTCGAAACAGGAGCGGTTCTCTTGTCCGGTTTGCGTCAGCAATTACAAGGAGATGCGGAACTTGAAGTATCATATCAATCACGAGTGTTGTCAAGTTTTCCATTGTTCTTCATGCAACAAATGGAGGTTACTCTGCCAATGGACATGCCTCCGTTAGACCGACACGACCGTTTCCATGCCCCACTTGCGACAGAAGATTCAGATACTTTCGACATAGAACCTACCACATAA
- Protein Sequence
- MLCSCWCPDLCDVNIIMSADPAGGKPFQCLQCNRLFSDKPECTYHLRHECGKILQCPNCDKTFNGKRYLISHVRYECDLYDVNINMSVDLTSAKPFQCLQCNRLFSDKPGCTYHLRHECGKILRCPNCDKTINGKRNLMTHINYECDFIGWVHSTNAVQGMPRSYRCSKCDKSFGLKSDCTSHMRHECGKQLRCPRCNKCFSHQSNLSTHKHHECGQVPLCPACGKCFSLKRNLTRHMKTKWIVEMFLPEFSMSTSFQGVPHRYQCPTCSKCYRLKGDCTAHIKHECGKDLVCPTCSKRFKQRCNLSTHINHECGKVLSCPKCDDNNVPLSSKSIASVVTAPQRYPCPNCTKSYQAMKTLSYHMRHECGKVLQCPTCPQRFNLKTQLTTHINYECGKSLVCHYCNKQFFRGSHWLFPGSHPVATSPITSERIQCQVCNKIFRLKNHLTFHMKLAKVLNYFTRPRRKATSFQCPNCFKKFKAKSTLMTHTRYECGKCLLCPTCGKSFKFRSTLCTHVRHECGKELICTVAWSLPLISRNTLLGELSRHHCPTCQRSYKEKKDMLYHLKHECGQDLRCPTCNKHFQRKSHLKTHIKHECGQVLCCPNCQKRYKFKSPMSPMLRPVIRAKDPSTRLQCPNCNRTFSAEPSRKFHLKHECGKRFQCTSCKKSYKTKGNLTAHVNHDECVSLRARVKFETGAVLLSGLRQQLQGDAELEVSYQSRVLSSFPLFFMQQMEVTLPMDMPPLDRHDRFHAPLATEDSDTFDIEPTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -