Bput012966.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:24823407-24832333[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00011 0.01 17.2 2.3 1 20 37 56 37 58 0.95 2 19 0.36 32 6.2 3.0 1 21 64 86 64 87 0.94 3 19 0.015 1.3 10.5 0.3 2 21 88 107 87 108 0.90 4 19 0.0045 0.4 12.2 0.2 3 21 116 134 114 135 0.94 5 19 1.6 1.5e+02 4.1 0.1 3 20 143 160 141 162 0.88 6 19 0.00011 0.01 17.2 2.3 1 20 209 228 209 230 0.95 7 19 0.36 32 6.2 3.0 1 21 236 258 236 259 0.94 8 19 0.015 1.3 10.5 0.3 2 21 260 279 259 280 0.90 9 19 0.0045 0.4 12.2 0.2 3 21 288 306 286 307 0.94 10 19 1.6 1.5e+02 4.1 0.1 3 20 315 332 313 334 0.88 11 19 0.02 1.8 10.1 0.3 1 21 381 401 381 402 0.96 12 19 0.0084 0.74 11.3 0.9 1 21 410 430 410 431 0.95 13 19 0.0079 0.7 11.4 6.7 1 21 455 475 455 476 0.95 14 19 0.0017 0.15 13.5 1.7 1 21 506 526 506 527 0.95 15 19 0.12 11 7.7 1.4 2 20 536 554 535 556 0.90 16 19 0.0025 0.22 13.0 0.2 1 21 562 582 562 583 0.96 17 19 0.019 1.7 10.2 0.6 3 20 593 610 591 612 0.93 18 19 0.012 1.1 10.8 5.7 1 21 620 640 620 641 0.94 19 19 0.0023 0.2 13.1 0.2 1 22 647 668 647 668 0.95
Sequence Information
- Coding Sequence
- ATGGGTGTGGACTTGATGGTCGAGTATCGATTGAAACATCATGTGACTCGAGAGTGTGTGGCAGAGGTGCCGCTCATAAAAACCGTGCACCCTAAAGAATCCGAACTCTTCTACTGCAAGCGGTGCAATAAGGAATTTTCTTCGCAGAAATCTTTAGTTCATCACATGGACAACACCCGCTGCAAGAGGTTCGCCTGTCCGCACCAAAAATGCTCGAAAGAGTTCTCATGCGATAGCACTCTCCAGAAGCACATGCTGCTGTGTTGTCCCAATTGCGAGAAGGTATTTCGAAACGAACGGATGCAGAAAGTGCACGTGAAATACGACTGTGGCAAACTGCTCTTATGTCCAACTTGCAACAAGCGGTTCACAGCCAGTTCTGTTCTCAATACTCACGTGAAGTATGAGTGTGGTAAACACCTGTTCTGTCCCCTCTGCTTCAACGTCTTCACCACTCGTACGGGACGAGCCAGTCACTTGGCCCGTGGCTGCAACACGCGGCCGACTCCTGGGGGAGTCGCCAGGAATCGCGAGACCATCATGAAACCGATAGAATTTTGGAGTTTGGCAGAGGTGGTACAGATGCCGCTCATAAAAACCGTGCACCCTATAGAATCCGAACTCTTCTACTGCAAGCGGTGCAATAAGGAATTTTCTTCGCAGAAATCTTTAGTTCATCACATGGACAACACCCGCTGCAAGAGGTTCGCCTGTCCGCACCAAAAATGCTCGAAAGAGTTCTCATGCGATAGCACTCTCCAGAAGCACATGCTGCTGTGTTGTCCCAATTGCGAGAAAGTATTTCGAAACGAACGGATGCAGAAAGTGCACGTGAAATACGACTGTGGCAAACTGCTCTTATGTCCAACTTGCAACAAGCGGTTCACAGCCAGTTCTGTTCTCAATACTCACGTGAAGTATGAGTGTGGTAAACACCTGTTCTGTCCCCTCTGCTTCAACGTCTTCACCACTCGTACGGGACGAGCCAGTCACTTGGCCCGTGGCTGCAACACGCGGCCGACTCCTGGGGGAGTCGCCAGGAATCGCGAGACCATCATGAAACCGATAGAATTTTGGAGTTATTGTGGCATGGAGTCTTATATTATCAATCCAACGTGGAGTGTTGCTGATGCTTCGCGTTACCAATGCGCGCGCTGCCATAACAGCTTTGTGGGTCGTGACACTCTACTTGACCATATTAACAATGAGTGTGGTAAAGAGCAATCATATCAATGTACGGCGTGTAGTAAACGTTTCTCACTGGAGAACGACTTGCGTCAGCACGTGAACCATGCCTGTGATGATCCAGAGGTAGAGTTTGTTCTACTGAGCCAATCAGCGAGCGCCTGGCATGCGTCACGTTTCCATTGCGCGCGCTGCAAGAAGAGCTACAAACACAAGAACCATCTCAGCACTCACATGAAAAACGAGTGCGGGAGGAGAAATTCATTTACATATGATTATGACTTGAAATCGGTTCCCAACCCTGCATGGAGCTTGTCTGCTGGCGATCTCTTCTACTGCGAGCGCTGCGGCAGAAGTTACAAACACAGAGATGATATAGCCAATCATATCAAGCACGAGTGTGTGGAAACGCATCCGTTCCTATGTTTGTCGTGTAACACATTATTCTCTCTGAAAAGTCAATTAACTCATCACCAAGAGTATGAGTGTGGTAAACGTTTCCAATGTCCTCGATGTAATAAGATTTACAAATGGAATGCGGCTTTGAAGCGTCACTTGAAGCAGGAATGTAGTGTGCATGCATCGTTTGGCTGTGTGACATGTCACAAGACATACAAGACGATGCGTAGTCTGAACGCCCATGCTAAAGATGAATGTGGAAGAGAGTTGTCGCACCAATGTTCGAAATGCTCGAAGAGATTCACGCAGAAACGGCGTTTGACTTATCACGTGAAGCATGAATGTGGTGTCGTGTTTTCATGTCCGCTTTGTAATAATGGTTATAAACGTAAGAGTGATCTGGATGAACACGTTAAAACGCGATGTAAAGTATTCAACTTGTAA
- Protein Sequence
- MGVDLMVEYRLKHHVTRECVAEVPLIKTVHPKESELFYCKRCNKEFSSQKSLVHHMDNTRCKRFACPHQKCSKEFSCDSTLQKHMLLCCPNCEKVFRNERMQKVHVKYDCGKLLLCPTCNKRFTASSVLNTHVKYECGKHLFCPLCFNVFTTRTGRASHLARGCNTRPTPGGVARNRETIMKPIEFWSLAEVVQMPLIKTVHPIESELFYCKRCNKEFSSQKSLVHHMDNTRCKRFACPHQKCSKEFSCDSTLQKHMLLCCPNCEKVFRNERMQKVHVKYDCGKLLLCPTCNKRFTASSVLNTHVKYECGKHLFCPLCFNVFTTRTGRASHLARGCNTRPTPGGVARNRETIMKPIEFWSYCGMESYIINPTWSVADASRYQCARCHNSFVGRDTLLDHINNECGKEQSYQCTACSKRFSLENDLRQHVNHACDDPEVEFVLLSQSASAWHASRFHCARCKKSYKHKNHLSTHMKNECGRRNSFTYDYDLKSVPNPAWSLSAGDLFYCERCGRSYKHRDDIANHIKHECVETHPFLCLSCNTLFSLKSQLTHHQEYECGKRFQCPRCNKIYKWNAALKRHLKQECSVHASFGCVTCHKTYKTMRSLNAHAKDECGRELSHQCSKCSKRFTQKRRLTYHVKHECGVVFSCPLCNNGYKRKSDLDEHVKTRCKVFNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -