Bput013041.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:25459973-25466722[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.8e-05 0.0078 17.5 3.3 3 21 36 54 34 55 0.94 2 13 0.039 3.5 9.2 3.0 3 21 63 81 61 82 0.93 3 13 0.0021 0.19 13.2 1.1 2 21 89 108 88 109 0.93 4 13 0.00077 0.069 14.6 1.6 1 21 131 151 131 152 0.94 5 13 0.00035 0.031 15.7 1.2 2 20 159 177 158 179 0.92 6 13 2.1e-05 0.0019 19.5 0.6 1 21 185 205 185 206 0.95 7 13 0.00046 0.041 15.3 2.1 3 21 214 232 212 233 0.93 8 13 0.00076 0.067 14.6 0.6 2 21 265 284 264 285 0.94 9 13 0.00036 0.032 15.6 2.8 2 21 295 314 294 315 0.92 10 13 7e-05 0.0062 17.9 1.2 2 21 322 341 321 342 0.94 11 13 4.1 3.6e+02 2.8 2.2 3 21 358 376 356 377 0.92 12 13 7.9e-08 7e-06 27.1 0.5 2 22 384 404 383 404 0.94 13 13 0.011 0.95 11.0 0.6 2 22 411 431 410 431 0.93
Sequence Information
- Coding Sequence
- ATGAAAACAGACTACATATTGTTGAGACAAGCTGCTGGTTTCGAGGCGTGGAGGCATCCTGTCTTCGGCTCGCTGATTGGTCTAAGACATCCCGAGCGTGTTCACTGTCCGAACTGTGATAAGAGCTTTAAATATCGCAAACACCTTGTGACCCACATAAAACACGAGTGCGGACAAGTGTTACTATGTCGGTCGTGTAACAAGAGGTTTAACTATAAGTGTGACTTGAGTCGCCATGTCAATCATGAGTGTGGTAAAGATCTGCGTTGTCCAACTTGTCATAAGCGGTTCAACTCTGTGTCTTACCGCAATTCGCACATCAAAATCGGATATTTTAATGATACCGAATCTCTCATAGCCAACCTAACTGTTACACCAACTGTCGGCCGCTTCTTCTGCACAAAATGTCCGAAAAGCTTCAAGCTGAAACAAGACATCCGACGGCACGTGCGCTATGAGTGTGGAAAAGTGTTGAACTGTCCGAAATGTAACAAGAGTTTCAAGTATAAAGGCCACTTTGATGTACACGTGAACGATGAATGTGGCAAATGTTTTGTCTGCGCGAATTGTGGAAAGGTTTTCAATAAGAAAGCTTACTTCAACAGACACATCAATCACGAATGTGGTCTGAACCTGGCATGTCCAGTATGTCATAAGAATTTCAAGCAAAAATCGAACCGCGACCGACACTTGAAGCATGAGTGTGGTAAAGAATTACGATGTCATGTTTATGAGGTGTATAAAATGTTTCGTCCGATTGTCACCATACACGAGTCCACACGATCGGCTTTGCAATGTCCAAAATGTTTCCGCACTTTCAAGATTAGTACATACTTGAATACTCACATAAACTATGAGTGTGGTAAAGATCTGAGGTACTTGCATTGTCCCAGGTGCAGTAAGAATTTCAAGCGCCGATCTCATCTGTTGACTCATGTCAATCAAGAGTGTGGCAAGGAGATCAAATGTCCGACTTGTACGAGGAATTTCAAGTTCAAATCAACACTTCGGCGACACGTTAAACTTGGAATATGTAGAAAGAAAAGACCTTATAGAGGGCCACCATTGTTTTGTGCAGCTTGTAATCGACATTTCTTGAACAAGTATTTACTCTTTTACCACTTGAGACATGAGTGCGGCGTCGAGCTTCGTTGCCCGACTTGTGGGAAAGTCTTCACACAGAAATCCAACCTGTCCACCCATATGAATCGCGAGTGTGGTAAAGAGCTGCGCTGCGTCAAGTGTCTGAAGACGTTCAATCGTATTGGCACTCTCAATTATCATTTGAAGAGAGGTTGCAATCGAGAAAAGCTGAGTAGGAGCAAGAAAACTCCCGTCAAGAAAGAGGAATTGCAAGAATAG
- Protein Sequence
- MKTDYILLRQAAGFEAWRHPVFGSLIGLRHPERVHCPNCDKSFKYRKHLVTHIKHECGQVLLCRSCNKRFNYKCDLSRHVNHECGKDLRCPTCHKRFNSVSYRNSHIKIGYFNDTESLIANLTVTPTVGRFFCTKCPKSFKLKQDIRRHVRYECGKVLNCPKCNKSFKYKGHFDVHVNDECGKCFVCANCGKVFNKKAYFNRHINHECGLNLACPVCHKNFKQKSNRDRHLKHECGKELRCHVYEVYKMFRPIVTIHESTRSALQCPKCFRTFKISTYLNTHINYECGKDLRYLHCPRCSKNFKRRSHLLTHVNQECGKEIKCPTCTRNFKFKSTLRRHVKLGICRKKRPYRGPPLFCAACNRHFLNKYLLFYHLRHECGVELRCPTCGKVFTQKSNLSTHMNRECGKELRCVKCLKTFNRIGTLNYHLKRGCNREKLSRSKKTPVKKEELQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -