Bput002368.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015472.1:23163388-23171408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.083 7.4 8.2 0.3 2 23 134 156 133 156 0.95 2 12 0.045 4 9.0 2.6 1 23 162 184 162 184 0.98 3 12 0.00031 0.028 15.8 0.4 1 20 190 209 190 212 0.91 4 12 1.9e-06 0.00017 22.8 2.7 1 23 218 240 218 240 0.98 5 12 0.21 19 6.9 0.8 2 21 248 267 247 269 0.87 6 12 0.02 1.8 10.1 0.1 2 16 276 290 275 292 0.86 7 12 0.0038 0.34 12.4 0.1 1 16 363 378 363 380 0.88 8 12 3.9e-06 0.00034 21.8 0.4 1 23 416 438 416 438 0.98 9 12 0.002 0.17 13.3 6.9 1 23 444 466 444 466 0.98 10 12 0.00011 0.01 17.2 0.6 1 23 472 494 472 494 0.98 11 12 2.1e-05 0.0019 19.5 0.3 1 23 500 522 500 522 0.97 12 12 8.8e-05 0.0078 17.5 1.2 5 23 531 550 528 550 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAAATATGGTTTTCTGTCGCCTGTGTGCCCAAAAGAAAAAAGATTTCTGTGTCATCTTTACAGAAAATGAATTAAAATGGGATATTTCTACTAAAATCGAGAAATGTTTGCAAATTAGTGTCAGCCCAGAAGATGTTTTGCCGAAAACGCTTTGTGCTGATTGCCATGCAATGCTAGAAAATAGCTACGAGTTTTTCGAGACTAGTGCTACGGCACAGATCACCCTTCTATCTATCCTGGAGAAAGAACGACACAATAATCAAAAACAAGAAATGATGAACGAACCGAGAAGAAAAAGATCTCCTCGAAGCCTTGTTCAAGGTCTGGGGAAGGACAGCTCTGTTGTGAAGAAAGCGCCGGAGAGAGTCCGCCTGGACAAGACCTACTCGTGGCAATGCACGGATTGCGCGGAGATATTGGACACGCCGCGGAGCTTGGAAGATCATCACCGCGACCGGCACGGTCAGGCCGTCCGATACCACTGCAACGAGTGTGCCAAAGTGTATGACGTGTACAGGAAGTTCAGCCGCCATGTGCGACTGCATCGGAATCGTGACAAGTTCAGGTGTCTGGAGTGCGGCAAGGCGTTTGCTACGAGCCAGTCTCTGTCCAGCCACGGCGTGTTCCACTCGACGGCCCGGCCGCACCAGTGCGGGCTGTGCGGGAAGACGTTCAGGCAGCGGGGCTCGCTGTACGTCCACCGCCGCACGCACCAGGCCCCCCTCGCACCCCTCACCTGCCCCCAGTGTGGCAAGCAGTTAGGGTCGCGCCAGGCCCTGGTCACGCACTGCAAGGGTCACGCGGGCGCCCGGGACTTAACGTGCGAGATGTGCGGAAAGAGCTTCTCGGTGAAACAAGGACTCTTGTCTTGTTGCCAGGTTACGGTCGCGCCAGGCCCTGGTCACGCACTGCAAGGGTCACGCGGGCGCCCGGGACTACACGTGCGAGATGTGCGGAAAGAGCTTCTCGGTGAAACAAGGACTCTTGTCTTGTTGCCAGGTTACGGTCGCGCCAGGCCCTGGTTACGGTCGCGCCAGGCCCTGGTCACGCACTGCAAGGGTCACGCGGGCGCCCGGGACTACACGTGCGAGATGTGCGGAAAGAGCTTCTCGGTGAAACAAGGACTCTTGTCTTGTTGCCAGGTTACGGTCGCGCCAGGCCCTGGTCACGCACTGCAAGGGTTACGGTCGCGCCAGGCCCTGGTCACGCACTGCAAGGGTCACGCGGGCGCCCGGGACTACACGTGCGAGATGTGCGGAAAGAGCTTCTCGGTCAAACAAGGACTCGTCTATCACATGCTGTCTCACTCGGGCGATCGACCACACCGTTGCCAAGTCTGCGGAATGAGGTGCAAGACAGCCCACCTGTTGACGAAGCACTTGACGACGCATACGGACGTCAAGAAGCACCAGTGTGAAGTGTGCGGCAAGCAGTTCCGAGAGCGGGGGACTCTCGGTCAACACGCTCGCATTCATACGGGCGCCATGCCTTACGCGTGCGAGGCATGCGGCAAGACCTTCCGCTTCCAGGGGGCGCTGACCATCCACCGCCGGCAGCACACGGGCGAGCGACCGTACCGCTGCGACTGCGGCCGAGACTTCACCAACTGGGCCAACTACAACAAGCACATGAAGCGGCGCCACGGCCTGACCGCCAAGAAGAACTACGCGGACCCTGACTTCTACAAGACGCCCTGCTTAACCAGCGTGACCGACTTCTCTACCGACCATCCCAAGACAACCTGCGTAACCAGCGCGACTGACTTCTCTACCCGCGTAACCGACCCCAGCGTGACCGACCCCAGCGTGACCGACTTCTACACCGACCACCCCAAGACGGCCCGCGTAACCAGCGTGGCTGACTTCTACACCGACCGCTGCAAGACGGCCTGCGTAACCAGCGCGACCGACTTCTATACCGACCATCCCAAGACGGCCCGCGTAACCAGCGCGACCGACTTCTCTACCGACCATCCCAAGACAACCTGCGTAACCAGCGTGACCGACTTCTGTACCGACCATCCCAAGATGACCCGCGTAACCAGCGTGACCGACATCTATACCGACCGCCCCGAGACAACCTGCGTAACCGACCCCAGCACGACTGACTTCTACACCGACCGCTGCAAGACGACCTGCATAACCAGCGTGACCGACTTCTATACTGACCGCCCCGAGACAACCCGCGTAACCGACCCCAGCGCGACTGACTTATATACCGACCACCCCGAGACGACCCACGTAACCAGCGCGACCGACTTCTATACCGCCTGCTCCAAGACGACCCGCGTAACCGACCCCAGCGCGACCGAGTTCTCTACCGACCACCCCGAGACGACCTGCGTAACCGACCCTAGTGCGACTGCTGTGACAGCCGATAATGTCGGCGAGACAGAACAAGATAAAATGGCAGAGAAAAGTCCGGATGATCCGAACGTAGTTTCCGGATATTACGGTCCGGATCAGGTACACCTCAGAACGATGGAGAGCGAAGAATCAGCTTTTACAGCTGGAATGCAAAGCCTTTGA
- Protein Sequence
- MEENMVFCRLCAQKKKDFCVIFTENELKWDISTKIEKCLQISVSPEDVLPKTLCADCHAMLENSYEFFETSATAQITLLSILEKERHNNQKQEMMNEPRRKRSPRSLVQGLGKDSSVVKKAPERVRLDKTYSWQCTDCAEILDTPRSLEDHHRDRHGQAVRYHCNECAKVYDVYRKFSRHVRLHRNRDKFRCLECGKAFATSQSLSSHGVFHSTARPHQCGLCGKTFRQRGSLYVHRRTHQAPLAPLTCPQCGKQLGSRQALVTHCKGHAGARDLTCEMCGKSFSVKQGLLSCCQVTVAPGPGHALQGSRGRPGLHVRDVRKELLGETRTLVLLPGYGRARPWLRSRQALVTHCKGHAGARDYTCEMCGKSFSVKQGLLSCCQVTVAPGPGHALQGLRSRQALVTHCKGHAGARDYTCEMCGKSFSVKQGLVYHMLSHSGDRPHRCQVCGMRCKTAHLLTKHLTTHTDVKKHQCEVCGKQFRERGTLGQHARIHTGAMPYACEACGKTFRFQGALTIHRRQHTGERPYRCDCGRDFTNWANYNKHMKRRHGLTAKKNYADPDFYKTPCLTSVTDFSTDHPKTTCVTSATDFSTRVTDPSVTDPSVTDFYTDHPKTARVTSVADFYTDRCKTACVTSATDFYTDHPKTARVTSATDFSTDHPKTTCVTSVTDFCTDHPKMTRVTSVTDIYTDRPETTCVTDPSTTDFYTDRCKTTCITSVTDFYTDRPETTRVTDPSATDLYTDHPETTHVTSATDFYTACSKTTRVTDPSATEFSTDHPETTCVTDPSATAVTADNVGETEQDKMAEKSPDDPNVVSGYYGPDQVHLRTMESEESAFTAGMQSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -