Bput012127.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:14533750-14536239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.019 1.7 10.2 0.6 1 23 223 245 223 245 0.96 2 14 2.4e-05 0.0021 19.3 1.1 1 23 251 273 251 273 0.98 3 14 0.0095 0.84 11.1 1.0 2 23 277 299 277 299 0.95 4 14 2.3 2e+02 3.6 5.5 1 23 309 332 309 333 0.92 5 14 0.017 1.5 10.4 0.3 3 23 347 366 345 366 0.95 6 14 0.00038 0.034 15.5 3.5 2 23 373 395 372 395 0.95 7 14 0.063 5.6 8.5 1.4 2 23 537 560 536 560 0.95 8 14 0.0009 0.08 14.4 0.4 1 23 568 590 568 590 0.98 9 14 1.8e-05 0.0016 19.7 2.8 2 23 611 633 610 633 0.95 10 14 0.0034 0.3 12.5 0.6 1 23 639 662 639 662 0.95 11 14 2.8e-05 0.0025 19.1 3.2 2 23 670 691 670 691 0.98 12 14 0.00052 0.046 15.1 4.8 1 23 697 719 697 720 0.96 13 14 0.0041 0.36 12.3 0.4 2 23 730 752 729 752 0.89 14 14 3.9e-06 0.00034 21.8 3.1 2 23 760 781 759 781 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAATACATTTTATATCATTAGAGAATCCAGTGAAAGAGGAAAGTCCAGATATTACTGACGTGGCTGCCACGTCAAAGAATTACAGCGTTGATGCCATTCACTCAACAAACCAAGAACATGCAGGTCTATACGACAACGCCAGCGAATTTATTTCGTCGGACTTTTTTAACCCAGTCAATGAAGCTAGTTTTTGCAACAGTCACGGAGAAAATCATATAAAGCAAGAAATTGGCCACTCGGAAGATCTGCCGAACAGTGACACTACTGAAAACGTTTGTGATTTTGCTTCTGAAGATATATTAAAGAGAGAGCTGGATGATCGAGCTACAAGTTGCAACAACGTAGTGCCGAGTACTGACGTTATGGGGAATATTGACGTTGGTATTACTATAAAAGAAGAGCCGCTCGATACAGAACAAATAGGCCTACCGAACGTAGATGTCGAACGAGATTCAGGAAGTGTCGGCACCACTACCGGTGTTTTTGATAGTAGATACTTGATGTGTTCACCGCAGGAAGATCGTATCGGCGATTTCGAGAAATGTGCCCAAGTGTTTCTAGAGGAAAAGGTAGAAGGTGATTCTTTCAACGCAAGCGGAGGAAATGCCGCGGATCCTTTAGGAGACGTAGAACCGGCGGAGGAAGTGAATTCGTCTCGTTACACGTGCGCCTTGTGTTCTCGAACGTTCGCTAGAAAGGCGGGCATCCGTTTTCACTTGCAAACTCATACGAACAATGGACTGTACAAGTGTGACAAGTGTGACATGTCGTTCGTGAGGCTGCGTAACCTCCTAGTGCACTCTAAATCGCACCGTGACAGAGAGTGCAAGATTTGTCACGAGAATTTTGCTGACGTGGATGCAATGCACAAGCATTTGAACCTGGTGCACATAAAATGCGACAGGAAAAGACGACACTTCTCGTGTGTCACTTGTCAGAAAGTGTTTGTCAAGTTCCACAATTGCTTGAGGCACGTTATGGCGATACATCACGGGACCAAGTGGCCAAAGCCTGCCGACAGGTGTACCATCTGCGAAGTGTGCAACCTTGTTCTGAAGAATTCGTCTCTGAGGAGGCACCTTCGCGCGCACGACCGCAAGAGTTACATCAAGTGTTGTACTTGTTCGAAGGCTTTTGCAACAAGGAGTAATTTTTTGAGACACAGGAAACTTGTTCACAAAGACGTCACAGGCGAATTGCCTGGTAAGTCCTTTGACGCAAACGTTACAGTCGACCGAGTCAATGCGGTTTCGTACGACTTGCGAATTTCGGATGGAATTGAAGGTAGGCCTACTGTAAATGAAGTAGGCTTACCTGACGATTTTACCAATCGAAAAGAAATAGGCAATCTTTCACACGTTACAATCAAAGGCGATCCTGACTGTCGCGCTCGAGTTCCAGATGCAATTGAAAATACTGTAAATGAAGTAGGCCTACCTGATGGTGTTGCCAAGCGAAGTCAAGTGTGCAAATTTTCACTAGTCACAATCAAAAGCAGTCCCGACTTATGCGCGGGAAATTCTTCAGCTGTCGCCGACGTTGGTGGCGAACCAATCGAAAACGAGACGAGCTACTACCCCGATCATCCAAGTCAAACATGGAAGTGCAACTTTTGTCCGGATAAACAATTTCAGAGAAGATTCTTATTGAAATACCACATGCTCAAAGCCCATAAGATCATAAGCGGCAGCGAATACAAGTGTAACACCTGCGACGCTACGTTCGTTGGGAAGCAACAACTTGCTGGCCACACTAAACTCCACGAGGCGATAGCAGGTGTACCACTCCAACACCAAACCACCGGCAATAGTATAAACGACAAGGAGTGCCACATATGTCACAAGACATTCATACGATCCGCGTCGCTGAAAGAACACCTGTTGGTAAGCCATTCAGCGACGAAGAGTTTCAGGTGCGAGTCGTGTCCCGAAGCGTTCACTTCATTGCGTTACCTTGCCGACCACAAGAACCAGAAGCACAATGTCAATAAACAGCTCAATGAGTGCAACATTTGCCACAAGACGTACTCGAGAGCTAGAACTTTGAAGTATCATTTACAGACGCACAAGAAGAGTGTCGGATTCAAATGCGAGGATTGCGGTATGGATTTCACGTTGGCACGCTACCTTCATCGGCACAGGAACAAACACCATCCTTCGCCGAAAGATCGGAAGTCGGTTTATTGCACTGTTTGCGGTAAAGTGTTTGCGGCGAAGAATTTTCAGAAGCACCTCGAGACGAAGAGTCACATTGCCAATATTCAGGGTAATAAGTGTAAGATATGCGACAAGACGTTTACGCGTGTTAAAAGTCTGCAGACACATTTGAAAAGGCACGTTGTACCCTAA
- Protein Sequence
- MEEIHFISLENPVKEESPDITDVAATSKNYSVDAIHSTNQEHAGLYDNASEFISSDFFNPVNEASFCNSHGENHIKQEIGHSEDLPNSDTTENVCDFASEDILKRELDDRATSCNNVVPSTDVMGNIDVGITIKEEPLDTEQIGLPNVDVERDSGSVGTTTGVFDSRYLMCSPQEDRIGDFEKCAQVFLEEKVEGDSFNASGGNAADPLGDVEPAEEVNSSRYTCALCSRTFARKAGIRFHLQTHTNNGLYKCDKCDMSFVRLRNLLVHSKSHRDRECKICHENFADVDAMHKHLNLVHIKCDRKRRHFSCVTCQKVFVKFHNCLRHVMAIHHGTKWPKPADRCTICEVCNLVLKNSSLRRHLRAHDRKSYIKCCTCSKAFATRSNFLRHRKLVHKDVTGELPGKSFDANVTVDRVNAVSYDLRISDGIEGRPTVNEVGLPDDFTNRKEIGNLSHVTIKGDPDCRARVPDAIENTVNEVGLPDGVAKRSQVCKFSLVTIKSSPDLCAGNSSAVADVGGEPIENETSYYPDHPSQTWKCNFCPDKQFQRRFLLKYHMLKAHKIISGSEYKCNTCDATFVGKQQLAGHTKLHEAIAGVPLQHQTTGNSINDKECHICHKTFIRSASLKEHLLVSHSATKSFRCESCPEAFTSLRYLADHKNQKHNVNKQLNECNICHKTYSRARTLKYHLQTHKKSVGFKCEDCGMDFTLARYLHRHRNKHHPSPKDRKSVYCTVCGKVFAAKNFQKHLETKSHIANIQGNKCKICDKTFTRVKSLQTHLKRHVVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243541;
- 90% Identity
- -
- 80% Identity
- -