Basic Information

Insect: Brachyptera putata
Gene Symbol: -
Assembly: GCA_907164805.1
Location: OU015474.1:8729611-8731720[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.5e-06 0.00067 20.9 2.7 1 23 65 87 65 87 0.98

2 8 2e-06 0.00018 22.7 6.5 1 23 94 116 94 116 0.97

3 8 3.4e-06 0.00031 22.0 1.1 1 23 122 146 122 146 0.98

4 8 3.9e-05 0.0034 18.7 3.7 1 23 152 174 152 174 0.98

5 8 3.4e-06 0.0003 22.0 0.8 1 23 186 208 186 208 0.99

6 8 1.2e-06 0.00011 23.4 0.1 1 23 215 237 215 237 0.98

7 8 1.3e-06 0.00012 23.3 3.4 1 23 243 265 243 265 0.99

8 8 9.4e-05 0.0083 17.5 2.0 1 22 271 294 271 294 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.5e-06	0.00067	20.9	2.7	1	23	65	87	65	87	0.98
2	8	2e-06	0.00018	22.7	6.5	1	23	94	116	94	116	0.97
3	8	3.4e-06	0.00031	22.0	1.1	1	23	122	146	122	146	0.98
4	8	3.9e-05	0.0034	18.7	3.7	1	23	152	174	152	174	0.98
5	8	3.4e-06	0.0003	22.0	0.8	1	23	186	208	186	208	0.99
6	8	1.2e-06	0.00011	23.4	0.1	1	23	215	237	215	237	0.98
7	8	1.3e-06	0.00012	23.3	3.4	1	23	243	265	243	265	0.99
8	8	9.4e-05	0.0083	17.5	2.0	1	22	271	294	271	294	0.93

Sequence Information

Coding Sequence: ATGTGGACAATAAACGTATTTGACGAAGCGTTGGAGAGTTGCAATCTTGATACTAAAGACAACAGCACCGATGGACGTCACAGCTCAGCCGACTCGAGTCAGTGCGAAGACCCGTCAAAGACAGTCGAACATAACAACGAGTCGAACGATACAACCCCGCCTGCAGTCGTCCGAATTAAACCTCCGAAATCTCATAGTTGTACCGAATGCAAGGAAACGTTTCCCAAAGCTAAGCTTTTGCAAAGACACTTAAAAACACACGATGCGGGAAAACGTCAACATCATTGTGATAAATGTGATAAAGTTTTCAAACGAGCAGAACATTTAAAACTTCATATCCGTTCGCATACTCAAGAACGACCGTATGTTTGTACCTACGAAGATTGTGACAAGTCGTTCCTTCGAGCGGATCACTTGAAAAACCACATACGTATTCATACGGGTGAGAGACGATTCTCGTGCGACACTTGTCAAAGGAGATTCCTAACGAACGACAACCTTAAGCGTCATAAACGTACCCACGGACCCAAGCCCTCCGCCAAAGTTAACTACTCGTTCAAATGTGACGTGTGCGGAAGGTACTTCTCGAGAGCCGACACTATGAGAATCCACGTTAAAAGACATTTCGTCGACGAGAGAGAGTTTCAGTGTGCCGTTTGTCCGAAACGTTTCAGCGTCGTCAGTAATCTGCGTGCGCATCTTATGGTACACGCGAGAGAGTACCCGTATAAATGCGTACACTGCGATAGGACTTTCATCCGTAAAGACAAGTTGATTACGCATTTGAGACAGCACACTGGCGAAAGGCCTTTCTCGTGTCCTCGGCCGAATTGTACGAAGACTTACACAACGTCGAGTCATCTGAAGTCGCATTCGAAAACTTGTACGGTGTAG
Protein Sequence: MWTINVFDEALESCNLDTKDNSTDGRHSSADSSQCEDPSKTVEHNNESNDTTPPAVVRIKPPKSHSCTECKETFPKAKLLQRHLKTHDAGKRQHHCDKCDKVFKRAEHLKLHIRSHTQERPYVCTYEDCDKSFLRADHLKNHIRIHTGERRFSCDTCQRRFLTNDNLKRHKRTHGPKPSAKVNYSFKCDVCGRYFSRADTMRIHVKRHFVDEREFQCAVCPKRFSVVSNLRAHLMVHAREYPYKCVHCDRTFIRKDKLITHLRQHTGERPFSCPRPNCTKTYTTSSHLKSHSKTCTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00243528;
90% Identity: iTF_00243528;
80% Identity: -