Bput013037.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:25407676-25424615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.01 0.93 11.0 0.5 1 20 25 44 25 46 0.95 2 21 0.33 29 6.3 0.1 2 20 55 73 55 75 0.93 3 21 0.0011 0.1 14.0 2.3 3 21 109 127 107 128 0.94 4 21 0.018 1.6 10.3 0.5 2 21 135 154 134 155 0.93 5 21 0.1 8.9 7.9 3.6 1 15 186 200 186 207 0.86 6 21 0.00023 0.021 16.2 1.1 2 21 228 247 227 248 0.93 7 21 0.0011 0.1 14.0 2.1 2 21 255 274 254 275 0.94 8 21 0.01 0.92 11.0 3.6 1 21 305 325 305 331 0.96 9 21 0.00045 0.04 15.3 1.5 2 21 333 352 332 353 0.92 10 21 1.8 1.6e+02 4.0 0.6 1 12 359 370 359 374 0.84 11 21 8.6e-05 0.0077 17.6 4.2 1 21 391 411 391 412 0.95 12 21 1.3 1.1e+02 4.5 1.7 2 12 419 429 418 438 0.87 13 21 1.1 95 4.7 0.8 1 14 462 477 462 479 0.89 14 21 2.6e-06 0.00023 22.4 0.8 2 21 492 511 491 512 0.93 15 21 0.00045 0.04 15.3 1.3 2 21 519 538 518 539 0.94 16 21 3.2e-05 0.0028 18.9 3.7 1 21 560 580 560 581 0.97 17 21 0.0051 0.45 12.0 3.8 2 21 588 607 587 608 0.93 18 21 0.0017 0.15 13.5 0.8 2 21 615 634 614 635 0.93 19 21 0.0032 0.28 12.6 1.5 1 21 660 680 660 681 0.95 20 21 0.0011 0.094 14.1 1.1 2 21 688 707 687 708 0.94 21 21 0.0057 0.51 11.8 0.7 1 21 714 734 714 735 0.94
Sequence Information
- Coding Sequence
- ATGCCCAAGAAGCATGTCGACCTCCATCGCGTGGAGATCGCGAGCTCTGGGCACCACCTGGACTCTCTGCACTTCACCTGCGCGAACTGCGGCAACAGCTACGACAACAACACCACTCTGCTGGATCACATGACCCACGAGTGCGACATGATTGGTCCGAACACTTGTCCGACTTGCCACGTCAGTTTCCTCACGGGCAGTTCACTGTCGGCTCACATCAGTGATGGTTGCTGTAAAACCGTCAACTGTGTATTGTGTAATGAAGTTCTCACAAAAGAGCGTGTACAACGTCATCTCAAGTACGAGTGTCCGAAAAGGAAATGCTGTCCAAACTGTTCGAAGTATTTCATTCGTGCATCTGACCTTGAATATCACATGAAGCATGATTGTGTTCTAGTGTTGGAATGTGCAGCTTGTCAGAAGCGTTTCAGTTTGGTCAAGTCTTTGAAGAAACACATGAAATTCGATTGTGGGAAAAAATCCGTCATGATCTTTATCGACGACTGCCCGGAGACCAACAGTGTGGATGCTGTTCCCCAGGAAGTAACTACGATCTATCAGTGTGGTTCCTGTGGGAGGAGTTTCAGGAGAAAAGGGGACTGTACTTTCCATATGAAACACGAATGCGGTGTGGATGTTTGGACGCTGCCTGGTGCCAACTCAGTCATGAGCGTGCGATCCTACTGCCCGACGTGCGGCAAGAGCTACAAAGAACGGCGCCATCTGAACACGCACGTCAAGTACGAGTGTGGTCAAGAGCAGCGCTGTGCCACGTGCCTCAAGACCTTCAAGCAGCGCTCGCAGCTGACGAATCATGTGAAACATGAATGTGGCAGAGAATTGAGATGTCCATCTTATTGTGAAGACACGAAGAAGTATTTAGTCATCAGGTCTATTGTCAGCCTTCGACGTTTCCAGTGTCCCAACTGTACCATGAGCTTCAAGAAGAGCGAGAACCGAACGTACCATATAAAGCACGAATGTGGGAAAAAGCTTCATTGTCCGAAATGTAACAAGGAGTTCTCATTTAAGACCAGTTTAACCACTCACGTTAACTACAAGTGTGGGAAAGGTCATAGGTGCCCCAAGTGTTCTATAAGTTACAGGAAAGTCTCCTACACAATACCCGATGTCTTCGAGTTCGTTAGTCTTCAGACGATACCTCAGCGCTTTCAATGCCCGACGTGCAACAAGACCTTCAAACGGAAGAAACACATGACTTATCACGTGAAATACGAGTGCGGCAAAATACTGCAATGTCCGGCGTGTCACAAGCGGTTCACGAATATGCGTGACAAGAACTGCCATGTGAACTATGAGTGTGGTACTTTTTGCTCGACGTCATTCACCATCGATAACGTTGTCAGCCTACAGGACTCGACACATCGGTGTCATCGTCTCACTTGTGGTAAAACTTACGAGAAACGTTCCAAACGGGCAAGTCGCGTGAAAAAGGGCTGGAAGTATCTATTGTATTGCAATGTTTGTAACAAAAGATTCTCAACGAAGAGCAATCTTACGGCACACACCAACTATGAATGTGGCCAAGACATTCGTTGTCCTATGTGTAATAAACAGTACAAACATAAACGTAGTTTGTCGGTTCACTTGAAATCATACTCAGGGGTTCAGATGCCTTTTTCCTTGACTTCGGAACTGAAAGCAGACGAGACACGTTTCCGTTGTCCGAACTGCAGCAAGAACTTCAAGAAGAGGGACCACCTGACGTACCACATGAGACACGAGTGTGGTAAAGTGCTTTGCTGTCCCACGTGCAACAAACGCTTCACGAAGAAAGGTCATTGGAAAGATCACGTCAAGTTCGAATGTGGCGTCGACCTTCGTTGTCCAACTTGTAACAAACAGTTCATGCAGTTACGTAATCTGAGTGCTCATGTGAAGCACGAGTGTGATTTCGCCGGCGAAATGCCGTTGGTGGTGAACCTGGTTGTCAGCCACCTGGAGACGTCCGAGCGTTTCCAGTGCCCGACCTGCGACAAGAGCTACTCGCTGAGGTGGCGCCTGACCTACCACCTGAAGCATGAGTGTGGTAAAGAGCTGCGCTGTCCGACCTGCACGAAACGCTTCAAGCTTAGGGGACAGTTCACCACGCACATCAAGTACGAGTGTGGCAAAGCGTTCTATTGTCCCAATTGTAATAAACGTTTCTTGCTGAAACGATCGTTAGCGAAACACATGGCGAAAACTGTGGCATGCCATTCGAATTCGATAACGAATTGA
- Protein Sequence
- MPKKHVDLHRVEIASSGHHLDSLHFTCANCGNSYDNNTTLLDHMTHECDMIGPNTCPTCHVSFLTGSSLSAHISDGCCKTVNCVLCNEVLTKERVQRHLKYECPKRKCCPNCSKYFIRASDLEYHMKHDCVLVLECAACQKRFSLVKSLKKHMKFDCGKKSVMIFIDDCPETNSVDAVPQEVTTIYQCGSCGRSFRRKGDCTFHMKHECGVDVWTLPGANSVMSVRSYCPTCGKSYKERRHLNTHVKYECGQEQRCATCLKTFKQRSQLTNHVKHECGRELRCPSYCEDTKKYLVIRSIVSLRRFQCPNCTMSFKKSENRTYHIKHECGKKLHCPKCNKEFSFKTSLTTHVNYKCGKGHRCPKCSISYRKVSYTIPDVFEFVSLQTIPQRFQCPTCNKTFKRKKHMTYHVKYECGKILQCPACHKRFTNMRDKNCHVNYECGTFCSTSFTIDNVVSLQDSTHRCHRLTCGKTYEKRSKRASRVKKGWKYLLYCNVCNKRFSTKSNLTAHTNYECGQDIRCPMCNKQYKHKRSLSVHLKSYSGVQMPFSLTSELKADETRFRCPNCSKNFKKRDHLTYHMRHECGKVLCCPTCNKRFTKKGHWKDHVKFECGVDLRCPTCNKQFMQLRNLSAHVKHECDFAGEMPLVVNLVVSHLETSERFQCPTCDKSYSLRWRLTYHLKHECGKELRCPTCTKRFKLRGQFTTHIKYECGKAFYCPNCNKRFLLKRSLAKHMAKTVACHSNSITN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -