Bput013042.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:25471735-25478284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00083 0.073 14.5 1.0 1 21 31 51 31 52 0.96 2 14 0.00016 0.014 16.7 0.5 2 21 59 78 58 79 0.93 3 14 0.0025 0.22 13.0 4.9 2 21 86 105 79 106 0.95 4 14 8.9e-05 0.0079 17.5 0.2 3 21 114 132 114 133 0.96 5 14 0.078 6.9 8.3 3.9 1 21 162 182 162 183 0.94 6 14 8e-05 0.0071 17.7 2.4 2 21 190 209 189 210 0.93 7 14 2.6e-05 0.0023 19.2 3.2 1 20 264 283 264 285 0.94 8 14 2.3e-05 0.002 19.4 1.2 2 21 292 311 291 312 0.95 9 14 6.4e-05 0.0057 18.0 1.4 2 21 319 338 318 339 0.93 10 14 5.1e-05 0.0045 18.3 1.1 1 21 371 391 371 392 0.93 11 14 0.0018 0.16 13.4 2.4 2 21 399 418 398 419 0.95 12 14 9.3e-05 0.0083 17.5 0.9 2 21 426 445 425 446 0.94 13 14 1.2e-05 0.0011 20.2 2.0 2 21 453 472 452 473 0.94 14 14 3.3e-05 0.003 18.9 1.5 2 21 480 499 479 500 0.95
Sequence Information
- Coding Sequence
- ATGAAGGCAGATGAAGTCTACGATGATGGAAATTTGCATTTTCCTGCCATCAACTCCTTCGTTCGAATCCTCCAGCGAGATCCGGAACGTTTCTACTGTCCCAATTGTCCGAGCAACTTCTCCAACGAGCGGCTTCTTACATCTCACATGAAACACGAGTGTGGTAAAGATCTGCGATGTCCGATGTGCAACAAGTTCTTCGGTAACAAAGCGAACCTCGTCACGCACAAGAAACACGAGTGCGGGAAAGTATTGTCGTGTTCGAACTGCAACAAATCGTTCAAGTACTATCACGACATGCGGCGACACATCCAAGAGGAGTGTGGCAAGGTACTCGGCTGCCCCACGTGCAGCAAGACGTTCAATCGGAAGCGAGGTCTCAACACGCACATCAAGTATGAGTGTGGGAAAGTTCTTGTTTGTCCGACTTATTACATCCCGACTCTCATGATGTCGGCTCAATTGTTCCAAGACGCGGTGCGATATAACTGTTCCAACTGCATGAACAGTTTCAAGTACAAACACGAGCTAATGCATCACATGACTCGAGTCTGTCGCAAGAAGTGGAGTTGTCCGAAATGCCAGAAGACTTTCGCTCGTAAAACTCATCTATCCACGCATGTCAAGCATGAGTGTGGTCAAGATCTGAGCTGTTCTTCTTGCGACACAGGTACGTTCCAAAGCTTGTGCACCAGTTCCATACCAGGATTCCACAATTTTGTTCGTATTGTTTGTACCAGTTGCAAGTTGAACGTCAGCTCTCGTGATGAACATGTTTGTGCCAGAAAATTCGAGTGTTCTACTTGTCACAAAACTTTCAAGCGCAAGAGTGACTTCAACACTCATGTACTCTACGAGTGTGGTAAACTCTTACAGTGTCCTTCGTGTCATAAAGTATTCAAAGTGAAGAGTAGTCTCAGTACTCATATGAAATACGAATGCGGCAAGACGTTGTATTGTCCGAAGTGTAGTAAGCCGTTCACTCAGCGGAATCATCTGACGGCTCACGTGAATCACGCTTGTGGGCGTGAGCTGCGTTGTCCGACTTGCAAACCAGATTATTACCAACTCACCGACAAGTATGTGCGAACCAAACGTTATCCCGGTCCTTTTCTATGTCCCAAATGTAACAAGAGTTTCAAACAGAAACCTCGACTCACCTCGCACTTGAGACACGACTGTGGCAAAGATCTACGCTGTACAACGTGCAACAAGATCTTCAAACTGAGACATTACCTGTTGACTCACATGAAGTTCGAGTGTGGCAAACGGTTGAGTTGTCCGTCGTGCTCGAAGGTGTTCTACCAGCAGACGAATCTCAACTCGCACATCAAGCACGAGTGCGGAAGAGAGCTGCGTTGCCCGACGTGTGGGAAGAACTTCACGCACAAGAGAACTCTCAACACGCACATTAAACACGAGTGCGGTAAAACCTTGCAGTGCCCCAGATGTGGCAAGTGCTACGTCACGCACAATCAGCTCGTCAAACACATGAAAGCGGTGTGTGCTACTATCGAGGTCATCATACCGTAA
- Protein Sequence
- MKADEVYDDGNLHFPAINSFVRILQRDPERFYCPNCPSNFSNERLLTSHMKHECGKDLRCPMCNKFFGNKANLVTHKKHECGKVLSCSNCNKSFKYYHDMRRHIQEECGKVLGCPTCSKTFNRKRGLNTHIKYECGKVLVCPTYYIPTLMMSAQLFQDAVRYNCSNCMNSFKYKHELMHHMTRVCRKKWSCPKCQKTFARKTHLSTHVKHECGQDLSCSSCDTGTFQSLCTSSIPGFHNFVRIVCTSCKLNVSSRDEHVCARKFECSTCHKTFKRKSDFNTHVLYECGKLLQCPSCHKVFKVKSSLSTHMKYECGKTLYCPKCSKPFTQRNHLTAHVNHACGRELRCPTCKPDYYQLTDKYVRTKRYPGPFLCPKCNKSFKQKPRLTSHLRHDCGKDLRCTTCNKIFKLRHYLLTHMKFECGKRLSCPSCSKVFYQQTNLNSHIKHECGRELRCPTCGKNFTHKRTLNTHIKHECGKTLQCPRCGKCYVTHNQLVKHMKAVCATIEVIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -