Bput013119.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:25958150-25966050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00061 0.054 14.9 2.2 2 23 111 132 110 132 0.97 2 22 0.0017 0.15 13.5 4.0 1 23 138 160 138 160 0.98 3 22 0.0028 0.25 12.8 1.1 1 23 166 188 166 188 0.97 4 22 0.00026 0.023 16.1 3.3 1 23 194 216 194 216 0.98 5 22 0.0013 0.11 13.9 3.0 1 23 222 244 222 244 0.98 6 22 6.6 5.8e+02 2.2 1.9 14 23 249 258 247 258 0.91 7 22 0.0013 0.11 13.9 3.0 1 23 264 286 264 286 0.98 8 22 0.0021 0.19 13.2 3.9 1 23 292 314 292 314 0.97 9 22 0.0021 0.19 13.2 1.6 3 23 322 342 322 342 0.97 10 22 0.0015 0.14 13.6 2.4 2 23 349 370 348 370 0.95 11 22 0.049 4.4 8.9 0.1 2 23 523 544 522 544 0.95 12 22 0.00065 0.058 14.8 3.7 1 23 550 572 550 572 0.97 13 22 0.0027 0.24 12.8 2.1 2 23 587 608 586 608 0.96 14 22 2.6 2.3e+02 3.4 0.2 10 23 615 628 612 628 0.87 15 22 0.006 0.53 11.8 1.9 2 23 635 656 634 656 0.96 16 22 0.011 0.98 10.9 5.5 1 23 662 684 662 684 0.98 17 22 0.0031 0.27 12.7 0.6 1 23 707 729 707 729 0.95 18 22 0.00032 0.028 15.8 0.4 1 23 735 757 735 757 0.97 19 22 6e-05 0.0053 18.1 2.7 1 23 763 785 763 785 0.98 20 22 0.0019 0.17 13.4 2.6 1 23 791 813 791 813 0.98 21 22 0.00016 0.014 16.8 4.5 1 23 819 841 819 841 0.97 22 22 0.0072 0.64 11.5 1.0 2 23 847 868 846 868 0.97
Sequence Information
- Coding Sequence
- ATGAGTCGAAGCATGCTCATCTGTTGCATTTCCATGCTTTGTGTGTGCCATCCGACCGAATGCGAACGGAATCTGTCCGAATGCAGTTTGACGATGTCTGAGCTCGGAACACTCGTTCGTCCGACTCGGGACGGCCGAGCGCCAATAGAAGCGGGCCATATGAGGATCGCGTGTCACGGAGATAGCCGAGTACACACGATCAGCGAGGACCTAGCAACGGATCTATTACCCTCCACTGACCAAGGAGATGACGTTACCATGGATACCAGCACTACGAGTGTGGACAACCCCACCGAGAAGAAGAAGCGACGGAAAGAGAAGGTGACGGTGAGCTGCCACGTGTGCGGCTACAAGCCGACCAGGTCGTCCCACCTCGCCACGCACATGCTCACGCACACCACCGAGCAGCCCTTCCAATGCAAGCAATGTTCTTTCAAGTGCAAGGCGGCCAGCAACCTCAAGCGCCACCTGTCGGTCCACTCCGGGGAGCTCCCGTACCACTGCCCGCAGTGCCCGTTCAAGTCGTCGCAGCCGTCCCGCCTCAAGACCCACGTGCTGATCCACTCCGGGGAGCAGCCCTACAGGTGTACGCAGTGCGACTTCAAGTGCGGGCTGTCCAGCAACCTGAAGCGGCACATGCTGGTGCACACGAGGGAGCAGCCTCACCGCTGCCAGCTGTGTGACTACCGCTGCGGGCAGGCGGGCAGTCTCAAGCTGCACATGCTGACGCACACAGGTGAGCACACCAACCTGAAGCGGCACATGCTGGTGCACACGAGGGAGCAGCCTCACCGCTGCCAGCTGTGTGACTACCGCTGCGGGCAGGCGGGCAGTCTCAAGCTGCACATGCTGACGCACACAGGAGAGCAGCCTCACCACTGCCCGGAGTGCCCGTACAAGTCGTCTCGCGCGTACCGCCTGAAGACCCACATGCTGCGGCACTCGGGCGCGCTCCCTCACGGCTGCGACGCGTGTGGCTTCCGCTGCCGCTCGGCCAGCAACCTCAAGCGGCACGCGGCGACCCACGCGGGGCAGCGACCCCTGCAGTGCCGACAGTGCCCCTTCACGTGCAAGACGCCGCGCCAGCTCAACAGACACTTGCTGGGGCACATCGTGCCGACAGTGCCCCTTCACGTGCAAGACGCCGCGCCAGCTCAACAGACACTTGCTGGGGCACATCGGGTGATCCCACAGGATAGTGAGATGATGGACCTGGATCCTCCAGGCCTGGTGAGAGCAAAGGGAGGTCGCACGGAGGAGGAACCAGTGGCTGCCAACAAGACTGAGTGTGCTCCCAGCAAGAGGGAAGAAACGCAACCGCCTGCTACGAGCCGTGAGCCAGGGATACAACAGGATGGACTATGTGTATCACAACAGGAAGAACAGGATATTGCGGATGAATTGGATGAGATTGCGTTTGTATCGATCAAAGAAGAACCACACGAAGAATTGTCGGATGTCCAAGGCGATGCGGTAACCATGGATACGGACCTAACAACATGTACGAGTGTGGGCAGCGTCAGAGCAGTGAGAGCCGGGAAAGCCAAGCCGTCGGAGAAGACGACCACGTGCGGCGTGTGCGGCTACGACGCCGCCTGGCCGTCGCACCTGAAGATCCACATGATGATCCACGACGGCACGCTGCCGTTCAGCTGCGACGCCTGCTCGTACAAGTGTCGGCGCTCGAGCAACCTCAAGCGTCACGCGCTCACCCACGCCCGCCGGCCGCACGAGTGCAGGCAGGCAAGCAGTCTGTTGCCGTGCACACAGTGCTCCTTCACATGCAGCAAGTCAGGCGACCTCAAGCGTCACGCGCTCACCCACGCCAGCCGGCCGCACGAGTGCAGGCAGGCAAGCAGTCTCAAGAGACACGTGGCGCTTCACAACGCTGAACCAACGGTCAAGTGTGAGGTATGTTCTTATGTGTGTAGAACATCCAGAGATATGAAGAAACATGTGACTATTCACTCAGGGGAACAGATATTCCAGTGTACCAAGTGTTCACACAAGTGCGGTAAATTGAGCGGGTTGAAGAAACACATGTTGGTTCACACCGCGGAACAGTACCACCAGTGTTCCCGGTCGTTCCGTCTGAACGTCCACGCGTCGAAACAGGCCTTCCGGTGCGCCGAGTGTTCGTTCACCAGCAGGAAGTCCAGCGACCTGACGCGCCACGCGGTGATACACACTGGCGCCCAGCCGTACCGCTGCTCCGAGTGTCCGTTCCGGTCCGCCCGGTCCGGGAACCTGAAGGCGCACAAGATGCTGCACTCCGGAGAGCAGCCCTTCAGCTGCCCGGACTGCGACTACAAGTGCCGCAAGCCGAGGGACCTGAAGAGCCACCTGTCGACGCACACGGGCGAGCGGCCGTATCGGTGCACGCAGTGCGACTACGAGTCTTCGAGGTCAGCGTGCCTCAAGGAGCACGTGATGAAACACGCCGGGGTTCTGCCGTTCGACTGCCCGCGGTGTTCCTACAAGTGCACCAAGTCGAGCAATCTGAAGCGGCACTTGCTGACTCATGCCGTCGAGTCGTTACAGTGCGATGAGTGTTCTTACGAGTGTGGCACAACGAGTGACCTTGACAAACACTTGTTGACTCATGCCGTTGAGTCTGTAGGGGATTCCTGA
- Protein Sequence
- MSRSMLICCISMLCVCHPTECERNLSECSLTMSELGTLVRPTRDGRAPIEAGHMRIACHGDSRVHTISEDLATDLLPSTDQGDDVTMDTSTTSVDNPTEKKKRRKEKVTVSCHVCGYKPTRSSHLATHMLTHTTEQPFQCKQCSFKCKAASNLKRHLSVHSGELPYHCPQCPFKSSQPSRLKTHVLIHSGEQPYRCTQCDFKCGLSSNLKRHMLVHTREQPHRCQLCDYRCGQAGSLKLHMLTHTGEHTNLKRHMLVHTREQPHRCQLCDYRCGQAGSLKLHMLTHTGEQPHHCPECPYKSSRAYRLKTHMLRHSGALPHGCDACGFRCRSASNLKRHAATHAGQRPLQCRQCPFTCKTPRQLNRHLLGHIVPTVPLHVQDAAPAQQTLAGAHRVIPQDSEMMDLDPPGLVRAKGGRTEEEPVAANKTECAPSKREETQPPATSREPGIQQDGLCVSQQEEQDIADELDEIAFVSIKEEPHEELSDVQGDAVTMDTDLTTCTSVGSVRAVRAGKAKPSEKTTTCGVCGYDAAWPSHLKIHMMIHDGTLPFSCDACSYKCRRSSNLKRHALTHARRPHECRQASSLLPCTQCSFTCSKSGDLKRHALTHASRPHECRQASSLKRHVALHNAEPTVKCEVCSYVCRTSRDMKKHVTIHSGEQIFQCTKCSHKCGKLSGLKKHMLVHTAEQYHQCSRSFRLNVHASKQAFRCAECSFTSRKSSDLTRHAVIHTGAQPYRCSECPFRSARSGNLKAHKMLHSGEQPFSCPDCDYKCRKPRDLKSHLSTHTGERPYRCTQCDYESSRSACLKEHVMKHAGVLPFDCPRCSYKCTKSSNLKRHLLTHAVESLQCDECSYECGTTSDLDKHLLTHAVESVGDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -