Bput011492.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:2767866-2770487[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.59 52 5.5 1.4 1 23 51 73 51 73 0.93 2 14 0.0014 0.13 13.7 0.1 1 23 122 144 122 144 0.99 3 14 0.0019 0.17 13.3 2.4 1 23 168 190 168 190 0.98 4 14 0.0033 0.3 12.6 0.1 1 23 212 234 212 234 0.96 5 14 0.084 7.5 8.2 0.1 1 21 273 293 273 294 0.94 6 14 0.042 3.7 9.1 0.0 1 23 314 336 314 336 0.97 7 14 3.2e-05 0.0028 18.9 1.4 1 23 388 410 388 410 0.98 8 14 0.0092 0.82 11.2 0.0 1 23 432 454 432 454 0.97 9 14 0.13 11 7.6 8.9 1 23 460 482 460 482 0.97 10 14 3.4e-06 0.0003 22.0 4.2 1 23 488 510 488 510 0.98 11 14 3.5e-05 0.0031 18.8 0.9 1 23 516 541 516 541 0.93 12 14 9e-07 8e-05 23.8 2.1 1 23 547 569 547 569 0.99 13 14 4.6e-05 0.0041 18.4 0.8 1 23 575 597 575 597 0.98 14 14 2.6e-06 0.00023 22.4 1.6 2 23 604 625 604 625 0.98
Sequence Information
- Coding Sequence
- ATGGCTGACCTTGCGTCAACCAATGAGGTAGAGGACGGTGAGGACAGTTGGAGGGACCAAGATTTCTGCCTTCCATTGTGTGAAGCTGTCTACGACGCATCAACGTCTCAACCAACCAACACCCAAGCCGAGACTATATCTCTACCTTTGTTTCACTGTGGAATTTGCACAAAGCCATTCTGGGAGAAGACCAAGTTCATCAGCCATGTTCAAGATCACTCCGGTGAAACAGACTCTGGAGAGAACTCGGTCGAGAGTGAAGAAGACGACGACGCTGACGATACTCAAGAAGATGAGGGAATGGATAAAATGGCAGTGGATAACTCTTATATTCATATCGAAGATATAAGCAGTATTTCAAACTACAAATGTGCTATTTGTTTTCAAGCATTTCCCACAGATAAATCCCTTGTTGTTCATGTCCTGACTCATGACATCGAGAAGAGTGACACGAACAGTACAGCTTCCCCAATTGTGCCAACAGATAGCTCTTCTGCATTGTTTACATGTGCTATCTGCAGCAAACGTTGTGCCACGGAGACAGAACTTTGCGCTCACGTTTTGCGTCACCAAACATATATAAAACGTGATACGGAAACAACGACTGATAGAGTGGTAAATGAGATCCCAAATTTCACGTGTGCAATTTGTGGTCAGATGTTTGATACTGAATTGACTTTGGTTGTGCATGTTAGTCAGCATTCTGAAGTAAAAAATAAAACTCTAAACAATGTGAGACATTTTCCACAACAAGATGTAGATAAAGATACAAGTACCGCCAGTTCAGGTGGGGCCGGTTTAAAAAGAAAGATACGTTTTGTGTGTGCTGTTTGTAACGAAACGTGTGAAACAGGAGAAGAGCTGGTGAAGCACGTTAACAATGGTTGTAACGCTAGTAGTGTGGATAGTGCTTCGATAGCGCCTCTCAATAACGGTCTCTACACTTGCGCTATTTGTAATATTACGTTGGAATCAGATGTGGCGTTAGCGAGGCACGTTAAAGGTCATTCGTCAGCTTGCGACATTCAAGTGACAGTCATCAATCAAGAAACAAGTAAAAGCAGTCAGTTAAGGAGCTGTCGACCGAAACGTAGTTGCCTTGGTAGTCAAACTTCTCAAGATGATCCAGAAACGAATAAAGTTGATGTGGATGTCCTTTCTTTTCGTTGTGCTATTTGTAATGAATATTTCAAGAATAAGACGTCTTTAAAATCTCATGTTGAAACACATTTGGAACAAAAAACAAAAACAAAAAGTCGTGAAAAAGTGTCCAGGGTTCGCAACACAGGTGCGTACAGCTGCGCTCTGTGTGCTAAAGTGTATCCCAATGAGGCCGCATTGATTGTGCACGTTAATAACCATGCCTTGGCCAAGACGCATGTTTGTCCAGTCTGTCAGAAGGAATTCAAGTGTCACAGTCACATGAAGCGTCATGAGAAGATACACAGCGGAATCAGAGACTACCACTGTTCGATCTGTCCGGCAAGCTTTTCCCGCCAGAGTCACTTGACGACGCACAAGCGAATACACGACGGCATCAAGCCGTACAAGTGCACAGCGCCGGGATGTAAGAAGTCGTTCACCGACGGCAGTAACTTGAAGAAACACGCCACCAATAAGCACACCAACGAGAAGAACTACAAGTGCCAGACGTGCGGCAAGGTATTCGGTCGGTCCGACACGTTGAAGAAACACAACCGATCGCATTCCGGCGAGAAACCGTACTTCTGCGACATTTGCGCGCGTTATTTCCCACGCCGCGACTCCCTGATGAGACACCAGATGTCTCATCGAGGCGAGAGGCCCAATCGATGTGTGATTTGCGATCGGCGGTTCACACAGAAGTATGATCTCACGTTGCACTATCGGACTCATGCAAGGAACTTCACTCTGCCCAGTGATTGGTCGATGGACTTGTTGGGGCTGGGTAGAGCGGGAGGAGAGAATTTAGACTTGGTTGCAACTTCTGACACGCAGCAGCACACTATAGACGGTCAGTTCACTGCCACATAG
- Protein Sequence
- MADLASTNEVEDGEDSWRDQDFCLPLCEAVYDASTSQPTNTQAETISLPLFHCGICTKPFWEKTKFISHVQDHSGETDSGENSVESEEDDDADDTQEDEGMDKMAVDNSYIHIEDISSISNYKCAICFQAFPTDKSLVVHVLTHDIEKSDTNSTASPIVPTDSSSALFTCAICSKRCATETELCAHVLRHQTYIKRDTETTTDRVVNEIPNFTCAICGQMFDTELTLVVHVSQHSEVKNKTLNNVRHFPQQDVDKDTSTASSGGAGLKRKIRFVCAVCNETCETGEELVKHVNNGCNASSVDSASIAPLNNGLYTCAICNITLESDVALARHVKGHSSACDIQVTVINQETSKSSQLRSCRPKRSCLGSQTSQDDPETNKVDVDVLSFRCAICNEYFKNKTSLKSHVETHLEQKTKTKSREKVSRVRNTGAYSCALCAKVYPNEAALIVHVNNHALAKTHVCPVCQKEFKCHSHMKRHEKIHSGIRDYHCSICPASFSRQSHLTTHKRIHDGIKPYKCTAPGCKKSFTDGSNLKKHATNKHTNEKNYKCQTCGKVFGRSDTLKKHNRSHSGEKPYFCDICARYFPRRDSLMRHQMSHRGERPNRCVICDRRFTQKYDLTLHYRTHARNFTLPSDWSMDLLGLGRAGGENLDLVATSDTQQHTIDGQFTAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -