Basic Information

Insect: Brachyptera putata
Gene Symbol: -
Assembly: GCA_907164805.1
Location: OU015464.1:20074160-20081415[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.9e-06 0.00043 21.5 0.2 1 23 346 368 346 368 0.98

2 10 0.00087 0.077 14.4 0.6 3 23 376 396 374 396 0.96

3 10 1.8e-05 0.0016 19.7 0.8 1 23 400 422 400 422 0.97

4 10 2.1e-06 0.00019 22.6 0.3 1 23 428 450 428 450 0.97

5 10 3.1e-07 2.8e-05 25.3 0.6 1 23 456 478 456 478 0.99

6 10 8.4e-06 0.00075 20.7 0.7 1 23 484 506 484 506 0.98

7 10 8.3e-07 7.3e-05 23.9 0.2 2 23 512 533 511 533 0.96

8 10 0.0011 0.097 14.1 1.0 1 23 539 561 539 561 0.97

9 10 0.0001 0.009 17.3 4.8 1 23 567 589 567 589 0.99

10 10 4e-05 0.0035 18.6 0.8 1 23 595 617 595 617 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.9e-06	0.00043	21.5	0.2	1	23	346	368	346	368	0.98
2	10	0.00087	0.077	14.4	0.6	3	23	376	396	374	396	0.96
3	10	1.8e-05	0.0016	19.7	0.8	1	23	400	422	400	422	0.97
4	10	2.1e-06	0.00019	22.6	0.3	1	23	428	450	428	450	0.97
5	10	3.1e-07	2.8e-05	25.3	0.6	1	23	456	478	456	478	0.99
6	10	8.4e-06	0.00075	20.7	0.7	1	23	484	506	484	506	0.98
7	10	8.3e-07	7.3e-05	23.9	0.2	2	23	512	533	511	533	0.96
8	10	0.0011	0.097	14.1	1.0	1	23	539	561	539	561	0.97
9	10	0.0001	0.009	17.3	4.8	1	23	567	589	567	589	0.99
10	10	4e-05	0.0035	18.6	0.8	1	23	595	617	595	617	0.97

Sequence Information

Coding Sequence: ATGTGGGCTGACGATACTACTTCTTGTTTTGAAATAAATATATGTCGCTTATGTGCCAATAAAAGTGAAGTTATTATACCTATTTTTTCCAAGGAAGCGGACAAAGAAAGAGTAGATCTGAAAATCAGAAAGTTTTTGCCCATCGTCATACGTGAGGACGACTTGAAACCAAAGTATGTGTGTTTTACTTGTATTCAAAAACTGGAAGTGTGCAATGAGCTATTCGAGCTGTCACTTGTTGCCGACTCAAAGTTTGATTCTCTTCTACAATCGAGACATCTTTCTGAAAGGGATACCGACCTAGAAGCTCCTGCAGAATCATCTGAAGTCCAGGATACTTCAGAAAACCCCAAAAGTGGCTCATTTTTGGAAACAATTCTGCCTTCCGGTATCAGAACTTGGCCCGAAGACCTGGCCAAACATCCCGAGTTACAGAATAACAATGGAAACTTACCGGTGTTAACATCTGAAGAAGGGAGCGGAGTCATCGTTCTCAGTAAAAGAGATACCAAATCAATCATGCGTTCTGCCGAGGATGAAACCCAAGTTCCACAAGATATTGTCTTCATGGTAGAACTGAAATACAAAGACGACGATCAAAATACGTTGACAAAATCTCATGCAGTTTCATATGTAGTTGATCCACCAGATGCACACAAAAATAGTACTTTTTCTCTAGACAATAATAAGACATTGAGCAGAAACTTCCTAAGTGAGTTGTCCCCAACAAAGGCACACAACGTAGCGTATGCCATTGAAGACCGGTCACAGGTTTTCTCACTAACTTACTCTACAAATGCTCCAAGCTCAAGCTCAGTTAAATCCAATAGTATATTCACTGATAACGAATTAATTAAACACCCGAGAATGATTTATACAGAGACGTACCTGAACGCTGATGAGCGTTCGGATGTAGTTCTAAAAACTTCTGAGACTGAAAGTAACATTGATATAGATAATGCGTTGATATTCAAACGTACAATGAAAGAAGTGGACGGGAATGACAGTGAAATAATTGTGAAAAGTGAAAAGCCATTTCCGTGTGATCTGTGTGAAAAGTCGTATATGAGGCGAGCTAATCTTAAGGCGCACATGAGCGTTCATACTCAGGTGCGTCCACACTTATGTAACCAATGTGGTGCAAGATTTGTTCTGAGATGGGACCTCACGTTACATCTACGTATCCATAGCAACACATTTGCGTGCGCATTCTGTAGCAAAGCGTTCACAGTACGGAATAAACTTGAACGCCATATCCGCACGCATACAGGCGAAAGACCATTTGCATGCGCAACATGTGGAAAGGCATTTAGTGATAAACGCAACCTTGCTTCCCACGAAAAAACTCATTCATCAGAGAGGCCTTATGTCTGCCCAATCTGTGGCCGTAGTTTCCGCATCTCGGCCCACCTCCGTGACCACCGCAGAGTGCATTCGGAGATTGCCGCGTTCACCTGTGACATCTGTGGCAAGAACTTCAAGTGGAAGACAAACCTCAATATACATCTAAAGGTCCACACGGGCGTTCGTATACCGTGCGACGAGTGCGGGCGCGAGTTTTCGCGTCGTGCAGACCTAAAGAAGCACGAGCGTTCGCACAACGGTGAGCGCAGTCACGTTTGCGGCGTTTGCAACAAGAGTTACATGGACAAGGCCATCCTGCAGAAACACCTCAAGATGCACAACCAGTTGAAACCTTATACGTGTGATATATGCAACAAGAGCTTTCACTTCCAGTGGTACTTAAACTCTCACAAAAAGACACATCGCACCGTAAAGACATTTCCGTGCGAGCGTTGCAACCGAGTGTTCATGAAGAAAGGCAACCTGACGATACACCTGAAGCAGCACGATGACGACGCCAACCAGTCGGTGGATTCGCTGATCGAATTGGCGCAGGTAGAACCAGGCACTTTGGACTGA
Protein Sequence: MWADDTTSCFEINICRLCANKSEVIIPIFSKEADKERVDLKIRKFLPIVIREDDLKPKYVCFTCIQKLEVCNELFELSLVADSKFDSLLQSRHLSERDTDLEAPAESSEVQDTSENPKSGSFLETILPSGIRTWPEDLAKHPELQNNNGNLPVLTSEEGSGVIVLSKRDTKSIMRSAEDETQVPQDIVFMVELKYKDDDQNTLTKSHAVSYVVDPPDAHKNSTFSLDNNKTLSRNFLSELSPTKAHNVAYAIEDRSQVFSLTYSTNAPSSSSVKSNSIFTDNELIKHPRMIYTETYLNADERSDVVLKTSETESNIDIDNALIFKRTMKEVDGNDSEIIVKSEKPFPCDLCEKSYMRRANLKAHMSVHTQVRPHLCNQCGARFVLRWDLTLHLRIHSNTFACAFCSKAFTVRNKLERHIRTHTGERPFACATCGKAFSDKRNLASHEKTHSSERPYVCPICGRSFRISAHLRDHRRVHSEIAAFTCDICGKNFKWKTNLNIHLKVHTGVRIPCDECGREFSRRADLKKHERSHNGERSHVCGVCNKSYMDKAILQKHLKMHNQLKPYTCDICNKSFHFQWYLNSHKKTHRTVKTFPCERCNRVFMKKGNLTIHLKQHDDDANQSVDSLIELAQVEPGTLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -