Bput015335.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015462.1:33192692-33194548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.004 0.36 12.3 2.3 1 23 224 247 224 247 0.96 2 13 0.0035 0.31 12.5 0.2 2 23 253 274 253 274 0.96 3 13 3.2e-05 0.0028 18.9 1.4 1 23 280 302 280 302 0.98 4 13 3.2e-05 0.0028 18.9 0.9 1 23 310 332 310 332 0.98 5 13 1.3e-05 0.0011 20.2 0.5 3 23 339 360 338 360 0.97 6 13 3.4e-05 0.003 18.8 0.2 1 23 366 390 366 390 0.96 7 13 0.011 1 10.9 0.7 1 23 396 418 396 418 0.97 8 13 1.5e-05 0.0013 19.9 0.8 1 23 424 446 424 446 0.98 9 13 0.12 10 7.7 0.4 2 23 476 497 475 497 0.96 10 13 0.00044 0.039 15.3 0.3 1 23 504 526 504 526 0.97 11 13 1.9e-06 0.00016 22.8 2.8 1 23 532 554 532 554 0.97 12 13 1.4e-05 0.0013 20.0 1.7 1 23 560 582 560 582 0.97 13 13 4.7e-06 0.00042 21.5 0.4 1 23 588 610 588 610 0.99
Sequence Information
- Coding Sequence
- ATGATTGCAGACTGTGAAAAAAGTATACCAAATCTGTATGACGTAAATAAAGATGAAGATGTGGTGACACAGAACTCGGTTGTAAATGGAGATTCAATACACCATAACTTGGTAGTTGATGAAGACATCTTAGAACCCCACGAAGAAATAATTTTGGCCAACAGTCTTGAAGATGTCAACATTCCAAGAAGAATTGACGAGGAATCAGAAGACCATTCCACAGAAACATTGCCAACTAACATAGTTACACACTTTCCTGAGGAAGTAAATCTTCAAACAGAAAACATTTCGCTAGGAATCAATCTTTCAACGGGAAATATTGAACCTTTCAGCTTGCTTATTAATGGAGAAACATATCAATTCACTGGCACAAATTTAACACGATATGTTCTACCAGATAATAATGACATTACTCGAACACAGATTTTAGAAGAGGAACTCCAATCCAGTAAGTCGTCTGATGTACGGTTTATCAACTCTGTAAAAGGATGGATGGGGTGCGAGAATAATATCAACATTCTTACTGAAGATAATATTGACAGCAAAAACATTGAGTTTAATCAGTGCATCAAACGTAAACAGATATTTAGTGAACAAGATGATTCAAAAACAAAGAAAGAGGAGTTAGATTTATTTAATGCCGATGTGTTGGACACAATTCAGAATTCATATCCATGTACCGAATGCGACCGTGAATTTGTATCCACTCGTAGATTGCATTATCACATAAAATATTCTCATGCTCCCAAAGAGAATGTATGTCAATATTGTGGAGCGTTTTATAAACTGAAAAGAGATTTAGAAACCCATCTTTTAGAACATATTGATATGAACCGATACACGTGTGCTACCTGTAGCGAGGTGTTCAGTTTTAAAAAGCAGTTACGTGAACACCAAAAAGTTCATAAAACGGAGAAAACACATACGTTCTCATGTGCTACATGTGGTAAAATGTTTCAGAGCCGCCCTAGCTTAACATCGCATTTAAAATCACATTTGCCAGCTAGCATTCTTTGTTCACTGTGTGGTAAAGTGTTGAAAACACGAGACTCACTACGACAACATATGAAAGTAGTACATTCGGACGAACGACCCTTTCCTTGTCCTACTCCTACCTGCAATAAAAGTTTCAAAACAAATGCTCAGTTAAAAGGCCATGTCTCGGTGCATACAGGAGAGCGCAACTACGTTTGTGAAGCGTGTGGTAGTTCGTTTCATAACCTGACACTTTTAATCCAACACAAGCTCAGCCATTCTGCCAGTAAGCCGTATGAATGCAATATCTGCTCAGCTGCTTTCAATCGTCGTGGTAACTTAACAATGCATAAAAAGAAACATGAGCCTGGATATACTCCAAAGTATAGACCATCCCGCCAGAGGAAAGACGGAGAAGTAATAATCCAGAGGCCAGACCAATGTGTGGTACAATGCACTATTTGCAATAAATGGCTTAAATCAGCACTGACTTTGAAATACCATATGGGTAAACATTTGAAGGATAAACATCCATTCGATTGTGAAATTTGTGGTCAGAGGTTTATTTCGTCATTGTCGTACAAAATCCACGAGAGACTACATACTGGAGAGGCTCCATATACGTGTCCTGAATGCGATAAAACTTTCCGTAGCCGTTCATGTCTGAATCAACACTCTCTTATTCATAATGACATTTTCCCACATCCTTGCCCTTTTTGTGATCGAGCATTCAAACGTCTACAGTCTTTGTTAGTTCACAAACGCACACACACGGGAGAGAAAAATTTCAAGTGTCCCATCTGTAGCCGTGCGTTTGCAGAGAAAGGCGATATGAAGAAACATCAGCTTACTCATAACAGAGAGAAAATTATCAAACCATAA
- Protein Sequence
- MIADCEKSIPNLYDVNKDEDVVTQNSVVNGDSIHHNLVVDEDILEPHEEIILANSLEDVNIPRRIDEESEDHSTETLPTNIVTHFPEEVNLQTENISLGINLSTGNIEPFSLLINGETYQFTGTNLTRYVLPDNNDITRTQILEEELQSSKSSDVRFINSVKGWMGCENNINILTEDNIDSKNIEFNQCIKRKQIFSEQDDSKTKKEELDLFNADVLDTIQNSYPCTECDREFVSTRRLHYHIKYSHAPKENVCQYCGAFYKLKRDLETHLLEHIDMNRYTCATCSEVFSFKKQLREHQKVHKTEKTHTFSCATCGKMFQSRPSLTSHLKSHLPASILCSLCGKVLKTRDSLRQHMKVVHSDERPFPCPTPTCNKSFKTNAQLKGHVSVHTGERNYVCEACGSSFHNLTLLIQHKLSHSASKPYECNICSAAFNRRGNLTMHKKKHEPGYTPKYRPSRQRKDGEVIIQRPDQCVVQCTICNKWLKSALTLKYHMGKHLKDKHPFDCEICGQRFISSLSYKIHERLHTGEAPYTCPECDKTFRSRSCLNQHSLIHNDIFPHPCPFCDRAFKRLQSLLVHKRTHTGEKNFKCPICSRAFAEKGDMKKHQLTHNREKIIKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -