Bput015338.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- zic5
- Assembly
- GCA_907164805.1
- Location
- OU015462.1:33216029-33220788[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.015 1.3 10.5 0.2 1 23 275 298 275 298 0.89 2 15 6.7 5.9e+02 2.2 0.1 2 17 306 324 305 325 0.87 3 15 0.009 0.79 11.2 0.3 2 23 325 347 324 347 0.96 4 15 0.00034 0.031 15.7 0.8 3 23 354 374 353 374 0.97 5 15 0.016 1.4 10.4 1.6 1 23 380 404 380 404 0.92 6 15 5.5e-06 0.00049 21.3 0.3 2 23 415 436 414 436 0.97 7 15 5.5e-05 0.0049 18.2 3.6 3 23 444 464 442 464 0.97 8 15 4.5e-06 0.0004 21.6 0.6 2 23 471 492 470 492 0.95 9 15 4.2e-05 0.0037 18.6 0.8 1 23 498 520 498 520 0.98 10 15 4.9e-07 4.4e-05 24.6 0.7 1 23 526 548 526 548 0.99 11 15 0.0015 0.13 13.7 0.4 1 23 559 581 559 581 0.98 12 15 0.00012 0.011 17.1 0.1 1 23 588 610 588 610 0.97 13 15 4.5e-05 0.004 18.4 0.4 1 23 616 638 616 638 0.94 14 15 2.2e-05 0.002 19.4 2.4 1 23 644 666 644 666 0.97 15 15 1.3e-05 0.0011 20.2 1.0 1 23 672 694 672 694 0.99
Sequence Information
- Coding Sequence
- ATGGACGACATGTGTCAGATAGTGGAATACCAACCTGAAGAGAGTGCTGACACCGACAAATCAATCGACGAACCAAACAGTGAATTGAGCGAATTCATGGGATGTCACCGAATGTGCCGACTGTGCGCTTGCTTAGTCTATGAAGATGCACTGGTTTCTTTGTTTTCGGTTGAGAATGAACGAATGTCATTGGCTACAAAATTAGATAGAATTCTACCTCTAAAGATAATGGAAGACGATGGTTTACCACAAGTAGTTTGTATGCCCTGTGTTGGAAAGCTGAAACGTTGTGACGACATGATCGCTGCATTCGTGGCCGCCGACACCAAACTACGGAATCTGTTTCTCCACCAGTCATCTGACGAAATTGAGTTGCTCATTCAAACGGGTGAAGGAAGCATAGAAGCTGCTGATCCAGGAGAACCAAATGATCTAAATGAATCAGTTGTAAAGACAGAAGAATTCTTGCCATTGATCACTTCAATTCACGATACTGATGATGAAACTGAGAGCATAAGTAGGTCTAACATGTCGGCTGTTGATGAAGTCACAACAATTGAACTGTCAGAAGAAATCGTCAATCCACCTTATAGCAACGAAATGATAAACGAAGAAACTGGTGACGGAATGATGAAGGAAGAAAATTCACAAGATCTGTCACAGGACGTTGACGGTGAAGTAATAACAGATGATTTAACGGACATTTCTTCGGAGCTAATGAACAACACCTTCCATTTCAGTACAAACGGAAATAATTTACACGAAGGTTTTGGAGAAGAGGAACACATTGACGAAACGAAATATGTTTACATGGTGTCGTCGTATCAGTGTAGCACGTGTGGAGAAGAATTCATGGACAAAAATACAATGCTGTTACACGAAATTGAGAATCATCGCATCGTAGTTGATGAGGATCAATGTAATGACAGTATTATTTGTCCAAGAAGTACTAATCGAAAACGTGAGATGCAAACATGTAATGACTGCGGAGAGAGTTTTCTCGGTATGAAACCTTTGAAACGTCACATAAAGATGAATCACATTCCTGATGAGAATATTTGCAAATTTTGTGACGCACGTTTCAAGCGAAAATATTCTCTCGACGTTCACGTAAGACTTCACACGAATGAAAAACCCTACTTGTGCCCAGTACCTGGCTGTGACATGTGTTTCGCTTATAAAAACCAGTTTAAGCTTCACAAGTTCAGTCATACCGTGTCTAATAATATAGAGTTACCAATAAAATGTGAGGTGTGCGACAAAGAGTTCGGTACGAAAATCAATCTGTGGCGTCACAAACGTATTCACAAGAAGAAAGTGACATGCCTTTGTTGTCAGTGCGGTAAAGTCTTGTCGAATTCGGCCAGTTTACGCGTACATATGCGAACCCACAATGTTGAACAAGCGTGTGCCTGTCCTAAATGCGACAAACCATTCAAGGACAAGGTGTCCTTGTCAAAACACATTGCCATTCACGATGAGGCAAAGAACTTTCCGTGTGAAATTTGTGGACGTTTGTTCTACAACAAGTCGTTGGTGCGACAACATTACCAGACCCATTCGGAAGTGAAACCATACAAGTGTGAAATCTGCAACACGGCTTTCAATCGTCTTGGCAACTTGAATCAACATATTAAAAAGCACATGAATGAGCAGTCGAACATAGAGCCGCAGTATGAGTGTCTGATCTGCGGCAAACGAGTAAAGTCGGAGCTGACATTGAAGTATCACCTGGCAAAACATACTGGGGAGAAAAAGCCGTTTGATTGCGAGATCTGCGGTAAACGTTTCATTGCGGCTGACCCGTACCGTATTCACATGAGACTTCATACTGGTGAACGGCCATTCTCGTGTGTCAACTGTGGCAAGAGTTTCCGTTCAGCAAGTACAATGAAGCAGCATGCCGCGCTGCATCGCGACGAGCACCCTCACGCCTGTCCGTACTGCGAACGCAAGTTCAAGCGTCTTCAGTCGCTGATCGTGCACAAGCGCACGCACACAGGCGAGAAGAACTTCAAGTGTCCGACTTGTAGCCGCGCGTTTGCACAGAAGGGCGACATGCTGAAACACACCAAGACGCACATGCGTAACCGGCTGGCCACTACCGCCGGATATAGGCCTATCGAAGAGTATGTTAACGTGTTGCGCATCGATCATATGACCGACCTTGCGCTCAGCGACTCGGACATTACTAGCGAGTATCTGATTGACATGCCCATAGTTGAAGTAGAAACGGAAATACAATCGGATATACTTTGA
- Protein Sequence
- MDDMCQIVEYQPEESADTDKSIDEPNSELSEFMGCHRMCRLCACLVYEDALVSLFSVENERMSLATKLDRILPLKIMEDDGLPQVVCMPCVGKLKRCDDMIAAFVAADTKLRNLFLHQSSDEIELLIQTGEGSIEAADPGEPNDLNESVVKTEEFLPLITSIHDTDDETESISRSNMSAVDEVTTIELSEEIVNPPYSNEMINEETGDGMMKEENSQDLSQDVDGEVITDDLTDISSELMNNTFHFSTNGNNLHEGFGEEEHIDETKYVYMVSSYQCSTCGEEFMDKNTMLLHEIENHRIVVDEDQCNDSIICPRSTNRKREMQTCNDCGESFLGMKPLKRHIKMNHIPDENICKFCDARFKRKYSLDVHVRLHTNEKPYLCPVPGCDMCFAYKNQFKLHKFSHTVSNNIELPIKCEVCDKEFGTKINLWRHKRIHKKKVTCLCCQCGKVLSNSASLRVHMRTHNVEQACACPKCDKPFKDKVSLSKHIAIHDEAKNFPCEICGRLFYNKSLVRQHYQTHSEVKPYKCEICNTAFNRLGNLNQHIKKHMNEQSNIEPQYECLICGKRVKSELTLKYHLAKHTGEKKPFDCEICGKRFIAADPYRIHMRLHTGERPFSCVNCGKSFRSASTMKQHAALHRDEHPHACPYCERKFKRLQSLIVHKRTHTGEKNFKCPTCSRAFAQKGDMLKHTKTHMRNRLATTAGYRPIEEYVNVLRIDHMTDLALSDSDITSEYLIDMPIVEVETEIQSDIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243485;
- 90% Identity
- iTF_00243485; iTF_00243314;
- 80% Identity
- -