Bput023939.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015464.1:8808190-8814513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.81 72 5.1 2.8 5 23 45 63 43 63 0.93 2 21 0.15 14 7.3 0.3 1 23 73 96 73 96 0.93 3 21 0.015 1.3 10.5 0.7 2 23 100 121 99 121 0.97 4 21 6.4e-05 0.0057 18.0 1.5 1 23 127 150 127 150 0.96 5 21 0.24 22 6.7 0.8 1 23 168 191 168 191 0.96 6 21 0.00095 0.084 14.3 1.1 1 23 197 219 197 219 0.96 7 21 1.6e-05 0.0014 19.9 4.8 1 23 224 247 224 247 0.97 8 21 0.00097 0.086 14.3 3.9 2 23 254 275 254 275 0.97 9 21 1.8e-05 0.0016 19.7 0.5 1 23 281 303 281 303 0.98 10 21 2.1e-05 0.0018 19.5 0.9 1 23 309 331 309 331 0.96 11 21 0.00013 0.012 17.0 6.0 1 23 337 359 337 359 0.96 12 21 1.3e-05 0.0012 20.1 0.1 1 23 365 387 365 387 0.98 13 21 0.93 82 4.9 2.3 5 23 446 464 443 464 0.94 14 21 0.00079 0.07 14.5 0.6 1 23 475 498 475 498 0.94 15 21 0.19 17 7.0 0.3 2 23 502 523 501 523 0.96 16 21 9.3e-06 0.00082 20.6 3.8 1 23 529 552 529 552 0.97 17 21 0.28 25 6.5 2.1 2 23 568 590 568 590 0.96 18 21 0.17 15 7.2 0.0 1 23 596 618 596 618 0.93 19 21 0.32 28 6.3 0.1 2 15 623 636 622 637 0.87 20 21 5.1e-05 0.0045 18.3 5.7 1 23 642 664 642 664 0.96 21 21 1.3e-05 0.0012 20.1 0.1 1 23 670 692 670 692 0.98
Sequence Information
- Coding Sequence
- ATGGCACAATATGGAAAAATGGTGGTTATTCCTGTTGAATGGACCAAGTCCCGTGCACCAGTCGTTCACAGTATGTCTAGACGATCCACAGCCACGAAAGAACCAGTCGAGATGAAGATCAAGTACATGTGTAAATGCAGCAAGGTTTACTTTGACAAGCAACAATTTAAAAAGCACAAAACGTTGCATAGGACGAGATACGTACGTGCAGATGGCTACGAGTGTGATGTTTGCAAAGAAGTATTACGTACAAAACGAGGTATCACTTTTCACATGAGAGACTTGCACAGGCCGCAGAAGTGCCTAGAATGCCGCGTTACTCTAGACTCTAAAATGTCGTTGAGATTGCATATGAAAGTGCACAGAAAAGAGACGAACTTTACTTGCCCTGTTTGTAGTAAACCATTTAAGAACCAAGGTGTAGTAAATCGTCACATGAATCACTTCCACGTGCCTGACTTCACCTTGATGGTTCTTGACGCGACGAAGACAGCTGTCGAGTACTCTTGCGATGACTGTGACTTCAGGACTAATCTCAGAAGCCGGCTGGTTCCTCACATGCAACGTTACCACAATGGATCTCTTGACCATTCTTGTCTTGAATGTGGCCGAGCTTTTTTCAGTAAACATGGTTTAGCTGGTCATATGGAGTTACATGATGGACTACAATATGTCTGCTCAAAATGTGGACAGTGCTTTAAACGACAGACGTATTTAACTAACCACGAGAAGCGAATGCACGAGCCTCGTACCAAGAGACAATGCCACGTGTGCGGCAAAGCTTTTGCCTCGAGAAGTGCTTTCAAGTGTCATATGGACAAGCACTTCAACAAGGACAAACACCGTTGCAACATCTGTGGCAAGACTGTCGGCTCGAGAGACACTCTATTGGTGCATCTCAGGATTCATACAGGAGAGAAACCATATCTGTGTGTCGTGTGTGGCAAAACGTTTTCTTCAAGAACCTACTGGCGGTCTCATCAAAAGGTTCATACCGGAGTGAAGAACCATCATTGCACTCGATGTGATAAGAGTTTTGCTCAACGTTCGTCATTGACTTTACATCTGAAATATCATTCTGGGCTGAAACCATTCGAGTGTGAACTTTGTGACAAGGCATTCATCACAAAACCGTTGTTAGCAGCTCACGAGAAAACTCACGCTTCGAAGCTTAGAACGTTGAAGGTAGTTTGTATTCCTCTTGAACATCTTGGACTACTGCCAAGCCAAGCCAAGCAAGGAATGTCAAAGACTTCTGAACCAGCAAGACATGGTATGTGCAGAAGGTCCGGAAGTATAAAGCAATCTGTGAAGAAGAAGACGAAGTACGTGTGTCATTGTCTCAGAGTATATTTTGACAGAAAAGAGTTCAAGCGTCATCAAATACTACATAAAATACGTGCAGAAGAAGCGTTGAACTCTTACGAGTGTGATGCCTGCAAGGAAATCTTTCGTACAAAACATGATTTAATCGTGCATTTAGACTACATGCATAAGAAAAAGACTTGTAAGAAATGTGAAGCCACGATCGATTCTCAAATGTTGTTGGAGTTGCATTTAAAAGCTCACCTGAAAGAAAGGAATTTCAAGTGTACAATTTGTCCAAAAGATTTTGTGAAAAAGAGACATCTGACCAATCACATGGAAAAAAAACACATGCCAGTATTTAAGATAAAGAAGGTAAAGGTAAAGGTTGTGAATACTTGTGACAAATGTGACTATACTACGTTGCATAGATCAAGTATTGCTCGTCATATGGCTCGTTTCCACGATGGACCACGTGATTATCCTTGTCTCGTTTGCGGGGAAGCTTTCTGGAGTCAGGCTCGCTTGAAATATCATGGTGAAATACACGAGAATTCCTTGATATGCGCACAATGTGGAATGACTTTTACACGATCGGTTCATACTGGAGTGAAGAACCATCATTGCACTCAATGTGATAAGAGTTTTGCTCAACGTTCGTCATTGACTTTACATCTGAAATATCATTCTGGGCTGAAACCATTCGAGTGTGAACTTTGTGACAAGGCATTCATCACAAAACCGTTGTTAGCAGCTCACGAGAAAACTCATGCTTCGTTCGTTCCAGTAGTTGAAGATGAAAGAGAAAACATTTTCTCTACACAATAA
- Protein Sequence
- MAQYGKMVVIPVEWTKSRAPVVHSMSRRSTATKEPVEMKIKYMCKCSKVYFDKQQFKKHKTLHRTRYVRADGYECDVCKEVLRTKRGITFHMRDLHRPQKCLECRVTLDSKMSLRLHMKVHRKETNFTCPVCSKPFKNQGVVNRHMNHFHVPDFTLMVLDATKTAVEYSCDDCDFRTNLRSRLVPHMQRYHNGSLDHSCLECGRAFFSKHGLAGHMELHDGLQYVCSKCGQCFKRQTYLTNHEKRMHEPRTKRQCHVCGKAFASRSAFKCHMDKHFNKDKHRCNICGKTVGSRDTLLVHLRIHTGEKPYLCVVCGKTFSSRTYWRSHQKVHTGVKNHHCTRCDKSFAQRSSLTLHLKYHSGLKPFECELCDKAFITKPLLAAHEKTHASKLRTLKVVCIPLEHLGLLPSQAKQGMSKTSEPARHGMCRRSGSIKQSVKKKTKYVCHCLRVYFDRKEFKRHQILHKIRAEEALNSYECDACKEIFRTKHDLIVHLDYMHKKKTCKKCEATIDSQMLLELHLKAHLKERNFKCTICPKDFVKKRHLTNHMEKKHMPVFKIKKVKVKVVNTCDKCDYTTLHRSSIARHMARFHDGPRDYPCLVCGEAFWSQARLKYHGEIHENSLICAQCGMTFTRSVHTGVKNHHCTQCDKSFAQRSSLTLHLKYHSGLKPFECELCDKAFITKPLLAAHEKTHASFVPVVEDERENIFSTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -