Bput030045.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015474.1:2002174-2006394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.6e-06 0.00067 20.9 6.7 1 23 290 312 290 312 0.99 2 18 0.11 9.9 7.8 4.1 1 23 318 341 318 341 0.93 3 18 0.034 3 9.4 1.2 1 19 344 362 344 364 0.96 4 18 4.8e-06 0.00042 21.5 0.4 1 23 372 394 372 394 0.98 5 18 0.086 7.6 8.1 5.6 1 23 400 422 400 422 0.97 6 18 0.00017 0.015 16.6 0.2 1 23 428 450 428 450 0.97 7 18 0.04 3.5 9.2 3.4 1 23 458 480 458 480 0.95 8 18 1.5e-05 0.0013 19.9 2.9 1 23 486 508 486 508 0.98 9 18 4.3e-06 0.00038 21.7 0.2 1 23 514 536 514 536 0.97 10 18 0.0039 0.35 12.4 3.3 1 23 541 563 541 563 0.98 11 18 0.0056 0.5 11.9 0.7 3 23 573 593 571 593 0.96 12 18 0.0058 0.51 11.8 0.7 2 23 600 621 599 621 0.96 13 18 0.023 2.1 9.9 0.2 1 23 627 649 627 649 0.97 14 18 0.00011 0.01 17.2 0.2 3 23 659 679 659 679 0.98 15 18 2.3e-05 0.0021 19.4 0.0 1 23 685 707 685 707 0.98 16 18 0.00053 0.047 15.1 0.5 1 23 712 734 712 734 0.98 17 18 4.6e-05 0.004 18.4 1.0 1 23 738 760 738 760 0.98 18 18 9.6e-05 0.0085 17.4 0.4 1 23 764 787 764 787 0.97
Sequence Information
- Coding Sequence
- ATGGAACCGTTGGTCTGGATGAAGAAGGAAGCACTCGAAGTCAATTGGATCAAACAGGAACTGGACTTGGACGTTGTTTTGCAAACAGAAAAAGATGCCACGGAAGAGCGCTTCATCAGTGCGGAGCCTGTTATTAAAACGGAACATCATTCCGAGTCGGTACAGCTGTTGCCGTCTAGTACAGAAGCGAGCCATCTCAAAGAATGCCAAGTTTCCATACGTGATGAAAACGCATTAGTGCTACCACCTTCTGGCAAGACAGACGCGGATGGCAACATTGTGGGATGTGGCAGCATAGCACAAGGTGGAAGCATAGTACTAGGTGGCAGCATAGTTGGAGGTGGCAGCATAGTAGGAGGTAGCAGCAGAGCAAGAGGTGGCAGCAGAGCAAGAAGTGGCAGCATAGCAAGAAGTGGTAGCATAGCAAGAAGTGGTAGCATAGTACTAGATGGTGACATAGGCTTAGTAGAAGATAGTGGCAGTATAACAGAAGAGGGTGGCAATATAACAGAATGGAGTGGCACCAGCTTTCCAGAACTACGTTTGGCAATAAAGAATAAAGTCGACTTAGTTGTACAGACAGAGCACTCTGGTGAGAAGGAGCCGGAAGCTCCGTCACCCTTGCAGTCCGTCAAGATCGAGTGTTCGACAGACTTCATGGTGGACAAGTTGTACTTGCGGCCGTTGGTGAAACTTACCAAACTCACGCTCCACGACATCGACAGAGAACGGCTTCGGCTGCGTCGTACGAGAGTCAACGATGTTCCGCTCGATGTCAAACTACCAACGGATCTTGACAGCTTACAAGGGTCCGTCATTGACGCGAGCGAGCCTACCGGTCGTGGTCCGCGATCGCCGCGTAAGAAATACACGTGTCACGACTGCGGCAAACAGTTCCACCGCCGCGACAACTTCCAACAGCACACCCGCGTCCACATGTCAGACCAGCTGTACTTCTGCACGCGTTGCAAAGTCTATTTCCCGACGCGTCTCCACCTCAACCGACATCGTCTCGACAAACACGGCACGTTCAAGTGCGAAGCGTGCAACGCCATCTTCCACGACAAGTCCACGTTCCGGCGGCACGAGACGGCCGAGTGCACGATCAAACCGTTCGTCTGTAACGTGTGTAACTTGTCGTTCAGAACCAAAGGTTATCTCAGGGGTCACATGTTAGTTCACGACGGTAAAAAAGAATTCGAGTGCGGTTATTGTAGTCGACGGTTTAACAAGAAGTTCGAATTGAAATGTCATATCTACCGTCACACGAAAGCGTGGCCGTTTCCGTGCGACGAATGTCCCCGCGGTTTCCCGCAACAGAAGGCCCTCGACAAGCATAAATACACCCACACGGGTGACCGGCCCAAACCGTTCGAATGCGACACGTGCAATAAAATGTTCCCGTGCCAACGATCGTTACGCTCGCACAAGGTGAGCCACGAGACGACGAAACCGTTCTCGTGCGAAATCTGCTCGAAACGTTTCCGCAACAAGTTCCAGTACGAGGTGCACCAACGTAACCACATCGGTCTGAGACCGTACGCGTGCGACGGCTGTCCGAAGCGTTACGCCGACAAGTCGACCTTGAAGAAACACGCCCTGACGCACACGGGCGTTCGTTACGAGTGCGAGACGTGCAAGACGACTTACAAGTCGATCAACAGCTACCGTAATCACAAGCGATCGCACGGGGTCGCGCGCGTCAAGACGATATTCTGCGAGGCGTGCGATCGGGGGTTTTACCACGCCAGCGTCTACAAGCGGCATCTGATCACGCACACGGGGGTGAAGTCGGTGCCGTGCCCGCAGTGCGATCACATGTTCTACACGGTCGAGGACGTTAAGAAGCACAGCAAGTCGCACGTGGAAGTCCGGCCGTTCCCGTGCAAGCTGTGCGACAGGTCGTACCTGCTGAGTGCGGGGTTGAGGGTGCACATGTTCAGTCACCGGCCGGCTAGCGAGCGACCGTTGGGTTGCGAGGTTTGCGGGCGCCGGTTCGTTACCGCCACGGCGCTCAAGACCCACGAGAAGATACACGCGGGCGTCAAGCCGTACGCTTGCGACGTGTGCGGGTTGGCGTTCGTCGTCAAGGGCAACTTGCAGCAGCATGTTCTCACGCACACGAAGAGCGCGTTTCCGTGTAGTTTGTGCGATAGAGTTTATTCGAACAAGCGCGGGATCGATAGACACTTGAAGAGTCACGGGACGAGTTTCGAGTGCGACATGTGTTCGAAGTCGTTCGGTTCGAAGGACCGGTTGACGAATCATCGGGCGACGCACGACACGGAGTTTGAGTGTACGTTGTGTGATGCTACTTACACGAGCCGATCTTCTCTAGGTAAGCATGTACGTAACGTTCACAAACAAAAGAAATGA
- Protein Sequence
- MEPLVWMKKEALEVNWIKQELDLDVVLQTEKDATEERFISAEPVIKTEHHSESVQLLPSSTEASHLKECQVSIRDENALVLPPSGKTDADGNIVGCGSIAQGGSIVLGGSIVGGGSIVGGSSRARGGSRARSGSIARSGSIARSGSIVLDGDIGLVEDSGSITEEGGNITEWSGTSFPELRLAIKNKVDLVVQTEHSGEKEPEAPSPLQSVKIECSTDFMVDKLYLRPLVKLTKLTLHDIDRERLRLRRTRVNDVPLDVKLPTDLDSLQGSVIDASEPTGRGPRSPRKKYTCHDCGKQFHRRDNFQQHTRVHMSDQLYFCTRCKVYFPTRLHLNRHRLDKHGTFKCEACNAIFHDKSTFRRHETAECTIKPFVCNVCNLSFRTKGYLRGHMLVHDGKKEFECGYCSRRFNKKFELKCHIYRHTKAWPFPCDECPRGFPQQKALDKHKYTHTGDRPKPFECDTCNKMFPCQRSLRSHKVSHETTKPFSCEICSKRFRNKFQYEVHQRNHIGLRPYACDGCPKRYADKSTLKKHALTHTGVRYECETCKTTYKSINSYRNHKRSHGVARVKTIFCEACDRGFYHASVYKRHLITHTGVKSVPCPQCDHMFYTVEDVKKHSKSHVEVRPFPCKLCDRSYLLSAGLRVHMFSHRPASERPLGCEVCGRRFVTATALKTHEKIHAGVKPYACDVCGLAFVVKGNLQQHVLTHTKSAFPCSLCDRVYSNKRGIDRHLKSHGTSFECDMCSKSFGSKDRLTNHRATHDTEFECTLCDATYTSRSSLGKHVRNVHKQKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -