Bput005017.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015467.1:32679685-32681919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.4e-06 0.00066 20.9 0.9 1 23 111 133 111 133 0.96 2 14 0.00077 0.068 14.6 0.0 2 23 139 160 138 160 0.96 3 14 0.00039 0.035 15.5 0.3 1 23 166 188 166 188 0.98 4 14 2e-06 0.00017 22.7 2.7 1 23 194 216 194 216 0.98 5 14 1.1e-05 0.00096 20.4 0.1 1 23 222 244 222 244 0.99 6 14 1.9e-06 0.00017 22.8 0.1 3 23 252 272 251 272 0.97 7 14 0.00079 0.07 14.5 0.5 1 23 278 302 278 302 0.97 8 14 6.1e-05 0.0054 18.0 0.9 2 23 309 332 308 332 0.94 9 14 0.00037 0.033 15.6 1.7 1 23 338 361 338 361 0.93 10 14 4.6e-05 0.0041 18.4 0.3 1 23 367 389 367 389 0.98 11 14 0.00031 0.027 15.8 3.6 1 23 395 419 395 419 0.99 12 14 4e-05 0.0036 18.6 1.2 1 23 425 447 425 447 0.98 13 14 1e-05 0.00088 20.5 2.3 1 23 453 475 453 476 0.96 14 14 0.0089 0.79 11.2 1.3 1 23 544 567 544 567 0.96
Sequence Information
- Coding Sequence
- ATGAATACATCTGCCGCTTCTAGTAATGGTTTCAACCTTTCAAGAGAGTCTGGAGGAACCATAGAGAATGACATGTTGGTTCTCAAAGCCGAACCTCTTTCGCCTTGTAACTTCGACGAAACGAACAACGACGTCTCGGACACGGAATCGCAAGCCGACGACTCACAACGCGAGATGAAAATAGAGATCGTGGAGCACGACGTGGAGATTGTCGGCGAGAATCAAGATGTGGTCGTGAAACGTGCTCGTAACACGAAAGTTGCCGTGAAGAAGAAAGCGGTAACGAAACCGGCAGCCAAGCCCGGTAAAGCCAGCAAGGGGAAAGTCTCTCACGTGTGCGAAACGTGCGATAAAGTGTACGCGACGTGGGACCTGCTCCGCCGGCACAGACTGTACCACCGCGAGAAGACTTTACCGTGCTCGGTGTGCGGCGTGAAGTTCCTGCGTCCCGCGGCTCTCAAGCGCCACATGTACGTGCACACCAACGAGAGGCCGTTCTCGTGCAAGGTGTGCGGGACGGGTTTCCGTGCCAAGAACACGCTGGACATCCACGTGCGTTCCCACAGCGGCGTCAAGCTGTTCAACTGCCAGCTGTGCGAGAAGTCCTTCGCTCACAAGAGCACGCTGACCACGCACATTCGAGTACACGAGAACGACAAGCCGTACAAATGTTCTTACTGCCCCATTGCGTTTCCAGCCAAAGGGGCGTTGACGAAACATCTTCGAATTCACACGAATTGCAGGCCGAATCCGTGCAAACTTTGTCCCAAAGCGTTCACCACCCCGGCCGGTTTACGGAACCACATTCGAATACATAACAACGAGAAGCCTTACAAGTGCACATTTCCCGACTGTAGCAAAGCGTTCACGCAAACGACGGGGCTTTCGGTTCACAAACTGATTCACACCGGGGAAAAACCGTGGCGGTGCAGTTGGCCCAAGTGTGACAAGTGTTTCGTTCAGAAGGGAACTTTAGACATTCACGTTCGAACCCACAAGAATCTCAGGCCTTATCTGTGCGACTTGTGCGGAAAAGGCTTCTATACCAAAAGGTCGCTCGGTCGTCACATTTCGCACTCACATCTACATCTGAAAGACTTCCAGTGTAAAGTGTGCGACAAGTGGTTTGCCCGTCAGACCGGGCTGGTGAGCCACATGAACATCCACACGGACACGCGGCCGTACAAGTGCACATACCGGGACTGCCTGAAGACGTTCCGGCAGCGCACGTCCATGCTGACCCACCTGCGCACGCACACGGGGGACAAGCGCTTCGAGTGCGGCATCTGCAGGATGCGCTTCGTGCAGAAGTCCACGCTCAACACGCACTTCCGAATACACTCCAAGGAGAAGCCGTACAAGTGCAAGCTGTGCAAGCAGGCCTTCGCCCAGTCGGGCAATCTCACCGACCACGTCAAGCGGCATCACGTCAACAAAGAGAAGAAGACCAAACAGAAGAAAGGCTCGAGTAAACGAAAGGAAAAGTCCGTCAAACAAGAAGAGTTGATCAAACAGGAGGAACTGACGATGGAAGTTGAAAGTTTGGACATTGAGTACGAAGAAATTGAAACTCATGATGACACTGCCAGCAATTGTGATGAGAACACGTCTACAATGACCGGTAAATTTTATACGTGTGAATTGTGTTTCGATACTTTCCCCAGAAAACGTAGTCTCATATCTCACGTAAAGAATAAACATTCTTTTGACGAGGACGAAATGTCCGAAGAGGAAATCAGCTCCGCAGAAGATTCCCCTACTTCGACGACTCGCTCTGCACAAGCCGATGAGCCGTACCTGTGTGAAGATGATTCGTTGAACAATAGACTGAGTAGTAGCGTAGTAGAGTCAGGTTTAGTTCGTGTATCGGAGGCTGCGAGTAACTTCACTGCACATCCAGCTATTACTATTAGTGACGGGGGAAATACTGTGGTTACTCTCACAAAATCAAGAGAGAACAGTGATGGCCCCAGAACTATTGAGAACTTGGCAAGTGATTGTGTGAACGCAAATAGTATCGTGACGACCAAACTTTCGTCTACTATTAATACCACAGATTGTGAAAACCGTCAGGTAGATGTTTCACGTGTCACGTTTAGTGTGGCCAATGAGTGTACTAGTCCTTCGGAACAAACTGCCGAAGTTTATCTTTGCGAAAATGGTTCAATTATCGAAAACTCTTCCATGATAGTTGTCAATAAAGAGATTGTAGAATCCACGACGACGAATGACTAA
- Protein Sequence
- MNTSAASSNGFNLSRESGGTIENDMLVLKAEPLSPCNFDETNNDVSDTESQADDSQREMKIEIVEHDVEIVGENQDVVVKRARNTKVAVKKKAVTKPAAKPGKASKGKVSHVCETCDKVYATWDLLRRHRLYHREKTLPCSVCGVKFLRPAALKRHMYVHTNERPFSCKVCGTGFRAKNTLDIHVRSHSGVKLFNCQLCEKSFAHKSTLTTHIRVHENDKPYKCSYCPIAFPAKGALTKHLRIHTNCRPNPCKLCPKAFTTPAGLRNHIRIHNNEKPYKCTFPDCSKAFTQTTGLSVHKLIHTGEKPWRCSWPKCDKCFVQKGTLDIHVRTHKNLRPYLCDLCGKGFYTKRSLGRHISHSHLHLKDFQCKVCDKWFARQTGLVSHMNIHTDTRPYKCTYRDCLKTFRQRTSMLTHLRTHTGDKRFECGICRMRFVQKSTLNTHFRIHSKEKPYKCKLCKQAFAQSGNLTDHVKRHHVNKEKKTKQKKGSSKRKEKSVKQEELIKQEELTMEVESLDIEYEEIETHDDTASNCDENTSTMTGKFYTCELCFDTFPRKRSLISHVKNKHSFDEDEMSEEEISSAEDSPTSTTRSAQADEPYLCEDDSLNNRLSSSVVESGLVRVSEAASNFTAHPAITISDGGNTVVTLTKSRENSDGPRTIENLASDCVNANSIVTTKLSSTINTTDCENRQVDVSRVTFSVANECTSPSEQTAEVYLCENGSIIENSSMIVVNKEIVESTTTND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -