Bput030580.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015474.1:8640030-8642699[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00081 0.072 14.5 0.4 1 23 184 206 184 206 0.98 2 23 0.00027 0.024 16.0 0.5 1 23 213 235 213 235 0.96 3 23 0.59 52 5.5 0.6 2 23 237 259 237 259 0.94 4 23 7.2e-05 0.0064 17.8 0.2 1 23 269 291 269 291 0.97 5 23 0.071 6.2 8.4 1.7 1 23 317 341 317 341 0.94 6 23 2.4 2.2e+02 3.6 0.3 1 23 342 365 342 365 0.89 7 23 0.44 39 5.9 1.6 1 23 371 394 371 394 0.89 8 23 9.8e-06 0.00087 20.5 2.5 1 23 399 421 399 421 0.98 9 23 0.00016 0.014 16.7 0.2 2 20 428 446 428 449 0.92 10 23 0.13 12 7.5 5.2 1 23 466 489 466 489 0.94 11 23 8.7e-07 7.7e-05 23.9 1.4 1 23 496 518 496 518 0.98 12 23 0.006 0.53 11.8 1.4 3 22 529 548 527 548 0.94 13 23 0.00036 0.032 15.6 2.3 1 23 561 584 561 584 0.96 14 23 0.00062 0.055 14.9 2.0 1 23 592 614 592 614 0.98 15 23 0.002 0.17 13.3 1.0 1 23 622 644 622 644 0.98 16 23 0.00064 0.057 14.8 2.5 1 23 650 672 650 672 0.98 17 23 2.7e-06 0.00024 22.3 0.8 1 23 684 708 684 708 0.93 18 23 0.057 5.1 8.7 1.5 1 23 721 744 721 744 0.95 19 23 0.0032 0.28 12.6 0.5 1 23 753 776 753 776 0.97 20 23 0.00023 0.021 16.2 6.7 1 23 781 803 781 803 0.98 21 23 0.00092 0.081 14.3 5.5 1 23 808 831 808 831 0.97 22 23 1.8e-05 0.0016 19.7 0.5 1 23 838 860 838 860 0.98 23 23 0.00089 0.079 14.4 2.2 1 23 866 888 866 888 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGAATTTTAGAACCAGATTCTTACGGTTTCTACTGCAAGATAGAAGTTGTCGAGAATGAATTTCCCGGTAATTTGTCGAGAGAATATGTCCCTCGCGAGAGCACAATCGTCAAACGTGAACGTACCGACCCTGACGTACCGACTCCATGCTTTAACCGTACATTGAAAAACGAATCGTTGAAATATTTACCTCCACCAGAAATGGAGTCAGGAACTCTTCAAGTAAACAGTGGCACTACGAAGTCGATTTTCAACAAAGATTCATTACCCGATCCATTGCTTTTGACCAATATAAAAAATGAAGTCGACTCGGAGAGTGTTGAATCGAGTCTTGGCTGTTCGAGCGTGATCGATAACGTGGCGAGAACAATCGATTCGGTGAGCCGTGTTTCGATGAGTGAGTCGCTTGGTAGCTGGTCCAACCCTATTCGTTCGTATTCACAGACGTCTAAAACTAGACTAAAACACGTAAAACGGTTTAAAAAAAAGAAGATTATACCAATTAAAAATGTCGCAGTGGAAATTGAAAAAAGGGGCCCACAGTATGTGTGCAATGAGTGCCAAAGGCCTTGCGCATCGAAGCTCGGGCTTATTCGTCACCTCTCGGTCCATTTTCCGCGAGTCCAATCGTATCTATGTAGCACTTGCAGCCTAACATTTCCGAGCTCAGTCGAGCTGAAAACTCACGTTCGCTCTCACAACACGTGTAGATTTTGCGGAGCAACTTTTATTGGTGTTGAATGCCTCGATAAACACGTGCTGAGAGAACATGGTAGTTCTAATGCGGAAGTAAAATCATTCGAGTGTGACAGCTGTTCTATGGTATTCGTCTCAAAATCGACCCTTATTCGTCACATCGCATTGCACTGGCCTATTGTCACAGAAGAATCAGAAGACTGCAAACGGGATAAACTAAAATATATATCAGGAAGCCGCAAGCGGTTTCGCTGCGATATTTGCGAACCCATCAAGAAATTCCAAACCTCGTTCACTTATTACAGTCATCTTCGTTCTCATTACGAATGTATCCATTGTGACCGTTCGTACTTGGACGCTCAATTACTCGATAAACATACGTTAGCTATTCATAATGATGGCAACGGATTTACGTGTGAACGTTGCGCGAAAAATTTTATAGATAGGCGAAAACTAACATTTCATGTCAAGTTTGCCCACCGCAACCTACCGTTCCAATGCTCCGACTGTGAGAAAAGTTTTTCTCGGCTCAAAACTCTCGATCGTCACAGGAAACTTCACGGCGGCGGCTCTAATCGTTCGTGTCCCGTTTGCGGTAAACATTTCACGAGAGGCGGCGGGCTAAAAGCCCACATGCCCATTCACGACAACGAACACGGGACGGAGGATCCGGTTCATATCTGTGGCGACGGATATTCGTGCAAACTCTGCCATGAACATTTCACTTCTAGACGTGGCTATAGCGTCCACTTCAGTAGCGAACATATCGAGTATGATGGACTATTCCAGTGCACAGATTGTCCTAAGAGCTTCAAACGGATTTCTAGTCTACGTACTCACGAAAAAATCCACTCTGTTACGAGCAACGATTTCAAACATTTGTGTTCGTTTTGCGGGGCATTCTTCAGACGACATGTCACTCTCGACGTGCACATGCGCACACGTACTGTAAATCGAGGAAAAAAGGGGCGCCTCCCGTACAAGTGTGAACATTGTAGTAAATCGTATATGTTGAAGGGTTCATTGACACGTCATGTAGAAATGACACACAATCCTAACGAAGCGAAACGATATAGCTGTCAGAATTGTGATAAAAGTTTCTACGGCCAGTATAGATTGAAAGAGCACAGTTTAACGCACGAAACTAACCGGGAATACAAATTCAAGTGTCAACTGTGTGAAAAGGGTTACCGTAAAAAAGAACGATACGCGGCTCACCTGCGCTGGCATTCCGGGGAAAATCCTTTCAAATGCAAATATTGTACGAAAGTTTACAATTCTATCTTGTCATTGAGGCGTCACGAAACTACCCATCGTAACGAGTACACGTCTGGACCGATTTCTTCGTTTCCGTGTCCGGTTTGTAACAAAACTTTCCCCCAATTGTCTGCGCTCAATCATCACCGGAAGACGCAAGGACACGACTTGGCGGAGACAGATTGCGAAGCGGGTGCGCCGCACAAGTGCCTCGAGTGCGAAAAACAGTATCTTTCGAAGAGGTCGCTGATACGGCACGTGAAGGGCGTGCACACGAAAATACAGATTCAATTGTCTTTCATGTGCGAGATTTGCGCCGTCGTCTTGTCGAAGTCGAGCGATCTCCGTTACCACAAACGTACGAAACACGGCGAACGTAATTTCCGTTGTACCGAATGCGATAAAGCGTTTTTCACGTGCTATCACTTGAGTGAACATTTGAAACGTCACAGGGAACCCGGATTCAAATGTAGCAAATGCGGGTTGACGTATTTCACTAGTAGACATTTGCGGCAACACAGAATTCGTAAACACTCGAAGATCAAGGAGTTGTTTATTTGTAACGAGTGCAACCGATCGATCTCGTCGAAATCGTCGCTCGTGATTCATTTGCGAAGACACTCAGGAATCAGGCCGTTCCATTGCCGCGTCTGTTACAGAACTTTCACGTCTAATGGGGCGTTGAAAATTCATACGGGTACACATTTGTAG
- Protein Sequence
- MERILEPDSYGFYCKIEVVENEFPGNLSREYVPRESTIVKRERTDPDVPTPCFNRTLKNESLKYLPPPEMESGTLQVNSGTTKSIFNKDSLPDPLLLTNIKNEVDSESVESSLGCSSVIDNVARTIDSVSRVSMSESLGSWSNPIRSYSQTSKTRLKHVKRFKKKKIIPIKNVAVEIEKRGPQYVCNECQRPCASKLGLIRHLSVHFPRVQSYLCSTCSLTFPSSVELKTHVRSHNTCRFCGATFIGVECLDKHVLREHGSSNAEVKSFECDSCSMVFVSKSTLIRHIALHWPIVTEESEDCKRDKLKYISGSRKRFRCDICEPIKKFQTSFTYYSHLRSHYECIHCDRSYLDAQLLDKHTLAIHNDGNGFTCERCAKNFIDRRKLTFHVKFAHRNLPFQCSDCEKSFSRLKTLDRHRKLHGGGSNRSCPVCGKHFTRGGGLKAHMPIHDNEHGTEDPVHICGDGYSCKLCHEHFTSRRGYSVHFSSEHIEYDGLFQCTDCPKSFKRISSLRTHEKIHSVTSNDFKHLCSFCGAFFRRHVTLDVHMRTRTVNRGKKGRLPYKCEHCSKSYMLKGSLTRHVEMTHNPNEAKRYSCQNCDKSFYGQYRLKEHSLTHETNREYKFKCQLCEKGYRKKERYAAHLRWHSGENPFKCKYCTKVYNSILSLRRHETTHRNEYTSGPISSFPCPVCNKTFPQLSALNHHRKTQGHDLAETDCEAGAPHKCLECEKQYLSKRSLIRHVKGVHTKIQIQLSFMCEICAVVLSKSSDLRYHKRTKHGERNFRCTECDKAFFTCYHLSEHLKRHREPGFKCSKCGLTYFTSRHLRQHRIRKHSKIKELFICNECNRSISSKSSLVIHLRRHSGIRPFHCRVCYRTFTSNGALKIHTGTHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -