Bput023929.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- znf711
- Assembly
- GCA_907164805.1
- Location
- OU015464.1:8751072-8755999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.1 3.6e+02 2.8 5.0 1 23 28 50 28 50 0.91 2 19 2.5e-05 0.0022 19.3 2.1 1 23 56 80 56 80 0.97 3 19 1.1 95 4.7 5.1 1 23 86 109 86 109 0.95 4 19 0.00048 0.042 15.2 4.8 1 23 115 137 115 137 0.97 5 19 0.0021 0.19 13.2 3.1 1 23 143 166 143 166 0.95 6 19 9.7e-06 0.00086 20.5 4.3 1 23 176 198 176 198 0.97 7 19 2e-06 0.00018 22.7 0.5 1 23 205 227 205 227 0.99 8 19 1.4e-05 0.0012 20.1 1.3 1 23 233 255 233 255 0.98 9 19 5.1e-05 0.0045 18.3 5.7 1 23 261 283 261 283 0.97 10 19 3.3e-05 0.0029 18.9 3.6 1 23 289 311 289 312 0.96 11 19 0.00029 0.026 15.9 1.2 5 23 349 367 348 367 0.97 12 19 0.00014 0.012 16.9 0.6 1 21 393 413 393 414 0.96 13 19 0.0011 0.094 14.1 2.1 1 23 421 443 421 443 0.97 14 19 5.7e-05 0.0051 18.1 4.7 1 23 449 471 449 471 0.99 15 19 5.6e-05 0.0049 18.2 0.5 1 23 480 502 480 502 0.98 16 19 5.1e-05 0.0045 18.3 0.1 1 23 509 531 509 531 0.99 17 19 5.4e-05 0.0048 18.2 0.9 1 23 537 559 537 559 0.97 18 19 7.8e-07 6.9e-05 24.0 4.9 1 23 565 587 565 587 0.98 19 19 4.5e-05 0.004 18.5 1.2 1 23 593 616 593 616 0.97
Sequence Information
- Coding Sequence
- ATGTCACCAAAGGCTTCTAAACGTAGTCAACATAGGCCAGTGTCAGAGCCTGATGTCACGGCAGAAGAAGAGGCAGAAACATTCAAGTGTGATTTGTGTGCAAAGGAATGTACGTCGAGTTGGTTGTTGAAGTGCCACAAGGTTAAACATAGTCAGTTGAGACCTTACGAGTGTACAGTTCATTTATGTGATAAGAAATTCAAGAGGCCGCAAGAGTTGAAGATCCACGTAAAACGTCACACTGGCGATCTAGATCATATTTGTTCTCTGTGCAACTATAGAACATTTTCCAACTTCAGACTTACTTTGCATCAAAAGAGAAAACACCTCAAAGACTCTAGCTATCATTGTACCATTTGCAAGAAGGGTTTTTATCATATGTCTGAACTTCGAAAACATAAAGCTGTACATGAAATGGTCAAACCTTTCCAGTGTGAGGTGTGCAAGAAATCTTATTCGTACAAAAACAATTTGGACTTTCACATGAAACAGAAGCATGATCCCAACTTTAAACTTGGATTGGACTATCAGTGCGACACTTGTGGGAAAACGTTTCGACACAGAAACTCTCTTCGAGTGCACAAACTTTATCATGCTAATTTAAACAAAGTATACCAGTGTGATGTATGCTTCAAGTCTGTGTCGTCCAAGGAAACGTTACAAATACACATGCGAATACACACGGGCGAACGTCCCTACATCTGCGACGAGTGTGGTCGTTCGTACACTTCACCGCAGTACTTCAAGATGCACAAACGGTCTCATACCGGCGCCAAGCCGTACTCCTGTAATCAGTGCAGCAAAAGCTTCACTCAACATTCTACGTTAACTGTCCACAAACGATTCCACAGTGGCATCAAACCTTATGAATGTTACCAATGTGAGAAGTCTTTTGTAACCAAGACACTACTTAATACTCATGAGAAAACTCATCATTCAGTTGCAACAAACACGAGTTCAATCAAGTATTTAGAAGATTACTACAATACTCGACAGCATAGAGTACGAAAAGTAGCATACCCTATATCAAAACAATTTCTGTGCGATTGCGGTGAGGAGTTTCCTTCCAATAGACATTTAAAGAAACATATATCAACTCACGAACCTCCTCTACCCGTCAAGGAGAAACCGAAACCGAAGCGACGACAAAAAGCAGTCGAGAAAGAAGTGGTCAACTACGTTTGCAATGTTTGTAATTTCACGACAACTCGTAAAGCTAATCTCCTCAAGCACAAGCGGTTGCGTTGCAATAAAAAGCTATATCAGTGCGATATATGTAACAAAGAATGTATATCTAGGTTTGGATTGAAGGAACATAAACAGGAGCATAAGGAGCTAAAGCCGTATGTTTGTCCGTTGTGTAGTAAGTCGTTTGGATTCAAACACAACATGCATGTTCATATGAGAAAACACGATCCGAACTATAAACCCGAAGTGTATCAGTGCGAGGAGTGCGGTCGCAGCTACAACAACCGAGGAGCGTTCCGAGGACACAAGCTCAGTCATGCCGGCATCAAGAAGTACTACGTGTGCGATATATGCGGCGCTCAAGTCAGTTCTAACGAAACACTCCGTGTCCATCGTAGACGTCACACCCTCGAACGTCCTTACATCTGCGACGAGTGCGGCCGCTCGTACACCTCACCGCAGTACTTCAAGATGCACAAGTTGTCTCATACTGGTGTCAAACCGTACTCTTGTAATCAGTGTCACAAGAGCTTCACGCAACGTTCCAGCCTGACCGTACATTTGAGGTATCACACTGGCCAACGCCCTTACGAGTGCACCATCTGTTTCAAAGCATTCATTACTAAAACTCTTCTTAATTCTCATGAAAAGAGTAGGCATAGTTGA
- Protein Sequence
- MSPKASKRSQHRPVSEPDVTAEEEAETFKCDLCAKECTSSWLLKCHKVKHSQLRPYECTVHLCDKKFKRPQELKIHVKRHTGDLDHICSLCNYRTFSNFRLTLHQKRKHLKDSSYHCTICKKGFYHMSELRKHKAVHEMVKPFQCEVCKKSYSYKNNLDFHMKQKHDPNFKLGLDYQCDTCGKTFRHRNSLRVHKLYHANLNKVYQCDVCFKSVSSKETLQIHMRIHTGERPYICDECGRSYTSPQYFKMHKRSHTGAKPYSCNQCSKSFTQHSTLTVHKRFHSGIKPYECYQCEKSFVTKTLLNTHEKTHHSVATNTSSIKYLEDYYNTRQHRVRKVAYPISKQFLCDCGEEFPSNRHLKKHISTHEPPLPVKEKPKPKRRQKAVEKEVVNYVCNVCNFTTTRKANLLKHKRLRCNKKLYQCDICNKECISRFGLKEHKQEHKELKPYVCPLCSKSFGFKHNMHVHMRKHDPNYKPEVYQCEECGRSYNNRGAFRGHKLSHAGIKKYYVCDICGAQVSSNETLRVHRRRHTLERPYICDECGRSYTSPQYFKMHKLSHTGVKPYSCNQCHKSFTQRSSLTVHLRYHTGQRPYECTICFKAFITKTLLNSHEKSRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -