Bput029791.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015474.1:24065-32678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-07 1.1e-05 26.6 1.1 2 23 167 188 166 188 0.97 2 17 0.00043 0.038 15.4 0.6 1 23 194 216 194 216 0.97 3 17 5.4e-05 0.0047 18.2 0.3 1 23 222 247 222 247 0.95 4 17 4.1e-05 0.0037 18.6 0.0 1 23 253 275 253 275 0.97 5 17 2.4e-06 0.00021 22.5 1.6 1 23 280 302 280 302 0.99 6 17 0.013 1.1 10.7 0.8 1 23 308 331 308 331 0.97 7 17 0.00041 0.036 15.4 4.5 1 23 337 359 337 359 0.98 8 17 0.017 1.5 10.4 0.2 1 21 365 387 365 388 0.96 9 17 0.00014 0.012 16.9 0.1 1 23 411 433 411 433 0.97 10 17 0.052 4.6 8.8 0.6 1 23 439 461 439 461 0.97 11 17 0.0011 0.093 14.1 3.1 2 23 468 489 467 489 0.97 12 17 0.00018 0.016 16.5 6.1 1 23 495 517 495 518 0.95 13 17 4e-06 0.00035 21.8 0.8 2 23 543 564 542 564 0.97 14 17 4.5e-05 0.004 18.4 1.5 1 23 570 594 570 594 0.98 15 17 2.4e-07 2.1e-05 25.6 1.9 1 23 600 622 600 622 0.99 16 17 1.6e-06 0.00014 23.0 4.2 1 23 628 650 628 650 0.98 17 17 1.2e-05 0.0011 20.2 4.5 1 23 656 678 656 678 0.98
Sequence Information
- Coding Sequence
- ATGGCTGGAGTAACCCCAGCGGAGCCACCAGCGGAATTTGACCCTCTGCAAAATGTTGAATGTGAATATCAACCAGATCCCCCTAGGCCTACGTCAACTGGCACTGGCGAAAGTAGTACATTCGAATACGTACCTATTAAAGTGGAACCGGATTTTTCGATTCTCGACGATAATGACGATATTCCTTTCAAAGAAACCGACGATTACGAGAGCCGAAATGTGAAACATGAAACAGTCGACGACGGCGCCAGTTCTGATCAAGACGTGATCGTATCAAACGAAGACCCACTTTTCGAACCGATACCACCCGAAACCTCTTTAGGCTTGAGTAAATATAAAATTCCTCTATCCACATCTATTGTAAAAGTTTCTAATCAGTACAGCATAAACCACAAGAATGTTAGCGTGAGGCCCCGGACAATCAGCCGCCGCCACCTCCAGCGGGCCGCCGCGTTGAGGCCGCAGGAATCCGAGCCGAGCGACGAAGAGTCCCGTCTTGAGTGTCCTCAGTGCAACAAGTCGTTCTCGCGCGAGTACTCTCTCAAGACGCACATGCGGCTGCACGAGGGCCAAGCGCTCTACCAGTGCAACATCTGCGACAAGCGCTTCACCATCCTCAGCATCCTGAAGATCCACGTGAAGCAGCACTCGGGCCGCAAGTACTTCAAGTGCAAGGCTGGCGACTGCGACAAGAAGTTCACGTCGGCCGGGGGACTCAAGTACCACACAAAGGCGGCACACAGCATGGTTCGCCCGTACCGCTGCGAGCTGTGCCCGAAGAGCTTTGTGGACGCCAGCGGTCTGGGCAAGCACGCGTCGGTGCACGCGGGCAAGGCTTACCGCTGCTCCGTGTGCGACCGCTCGTACTCGAGGGAGCGCTACCTCAAGCTGCACATGAAGATCCACTACGACCAGAAGCCGTTCCGCTGCGACCGCTGCGACACCACCTTCCTGTGGGCCGGCCAGCTCAAGCGGCACATGATGAGCAAGCACACAGGTGAGCGACCGTTTCCGTGCGACCGCTGCGACAAGTGTTTCATGACGCCGGCCTGTCTCAAGAGCCACCTGTTCACCCACTCCAACGAGCGGCCGTACAAGTGCACTGTCGCCGGCTGCAGCAAGACCTACACCACCGAGCCCATTCTCAAGAACCACATGAAGTCAGCAGTGAAGCTGGTTGAAATGGCTCTCAACACACGTGTGTTCCAGGTGCACACCGGCATCCGGCCGTACGCGTGCCCGATCTGTGCCAAGACCTTCAACGTGGCCTCGTACATGAAGACCCACCTGGCCATGCACTCGAAGAAGCGCCCGTTCCAGTGCTCCCAGTGCGAGGACTCGTTCATCACCGAGGGCCGGCTCAAGCTGCACACGCTCCAGCACAACGACGAGGTGACGCTCAAGTGCGACTTCTGCCAGAAGTGCTTCCTGCGCACCGGGAACCTGCGGGCCCACCTGCGGCTCCACTCGGGGGAGCGCCCCTTCCGCTGCCTCTTCTGCACCAAGGGCTTCACCACCAACGGCAACCTGAACAAGCATCTGCAGCACCACCACATCGAGGCGCAGATATTGCGTCGCATCGAGCTAGGGGCCAACCCCGTCAACAAGGACAAGGATCGCTCGCTCAAGTGCAACAGCTGCGAGAAGGCGTTCACCACCCTCGGCAACCTGAAGAAGCATCTGCAGATCCACACGGGTGAGCGCCCCTTCAAGTGCGAGGTCTCCGGCTGCCACAAGACCTTCATCGAGGCCAACAAGCTGAAGGTGCACTTGCGCACGCACTCTGGCGAGCGGCCTTACAAGTGCGATCAGTGCGACAAGGACTTCACTACGTCGGCCCACCTCAAGAACCACATCATGGTGCACACGGGTGAGCGACCGTTCCGCTGCCATCTGTGCGACAAGAAGTTCATCCAGGCGCGCTACCTCAAGAAACACATGATGATGCACAACGGAGATCTGCCGTTCCAGTGTCACAATTGCGGCCGGTGTTTTGTCGAGGCGTATCGGCTGCGCAAACACATGATGGTCCACGAAGCTCATGAGGCGGCCGCGCGATCGCCAGCAGCTTACCTTGATAATACTCCGTGCGTGCCGTTGAGAGCCTGGGGCTGCTCTGTTGATCGTCCACCAGCAGCTTACCTTGAGAAGACTCCGTGCGAGTAG
- Protein Sequence
- MAGVTPAEPPAEFDPLQNVECEYQPDPPRPTSTGTGESSTFEYVPIKVEPDFSILDDNDDIPFKETDDYESRNVKHETVDDGASSDQDVIVSNEDPLFEPIPPETSLGLSKYKIPLSTSIVKVSNQYSINHKNVSVRPRTISRRHLQRAAALRPQESEPSDEESRLECPQCNKSFSREYSLKTHMRLHEGQALYQCNICDKRFTILSILKIHVKQHSGRKYFKCKAGDCDKKFTSAGGLKYHTKAAHSMVRPYRCELCPKSFVDASGLGKHASVHAGKAYRCSVCDRSYSRERYLKLHMKIHYDQKPFRCDRCDTTFLWAGQLKRHMMSKHTGERPFPCDRCDKCFMTPACLKSHLFTHSNERPYKCTVAGCSKTYTTEPILKNHMKSAVKLVEMALNTRVFQVHTGIRPYACPICAKTFNVASYMKTHLAMHSKKRPFQCSQCEDSFITEGRLKLHTLQHNDEVTLKCDFCQKCFLRTGNLRAHLRLHSGERPFRCLFCTKGFTTNGNLNKHLQHHHIEAQILRRIELGANPVNKDKDRSLKCNSCEKAFTTLGNLKKHLQIHTGERPFKCEVSGCHKTFIEANKLKVHLRTHSGERPYKCDQCDKDFTTSAHLKNHIMVHTGERPFRCHLCDKKFIQARYLKKHMMMHNGDLPFQCHNCGRCFVEAYRLRKHMMVHEAHEAAARSPAAYLDNTPCVPLRAWGCSVDRPPAAYLEKTPCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -