Bput023933.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- Znf784
- Assembly
- GCA_907164805.1
- Location
- OU015464.1:8775994-8780555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.9e-05 0.0017 19.7 0.4 1 23 60 82 60 82 0.97 2 20 0.00017 0.015 16.7 3.1 1 23 88 110 88 110 0.98 3 20 0.012 1.1 10.8 0.4 1 23 116 139 116 139 0.96 4 20 3.7e-05 0.0033 18.7 0.1 1 23 144 166 144 166 0.98 5 20 0.018 1.6 10.3 1.2 2 23 172 195 171 195 0.96 6 20 0.0006 0.054 14.9 1.1 3 23 205 226 203 226 0.94 7 20 1.1e-05 0.001 20.3 0.3 1 23 232 254 232 254 0.99 8 20 0.00012 0.011 17.1 1.2 1 23 260 284 260 284 0.97 9 20 4.6e-07 4e-05 24.7 1.6 1 23 290 312 290 312 0.98 10 20 5.5e-05 0.0048 18.2 0.1 1 21 318 338 318 339 0.95 11 20 1.4e-06 0.00013 23.2 0.8 1 23 427 449 427 449 0.98 12 20 0.0032 0.28 12.6 0.2 1 23 455 477 455 477 0.96 13 20 0.3 27 6.4 0.3 1 23 483 505 483 506 0.92 14 20 0.00099 0.088 14.2 0.2 2 23 512 533 511 533 0.97 15 20 0.00023 0.02 16.2 1.9 1 23 538 562 538 562 0.98 16 20 0.0023 0.2 13.1 1.1 3 23 572 593 571 593 0.97 17 20 2.4e-05 0.0021 19.3 0.9 1 23 599 621 599 621 0.99 18 20 0.013 1.1 10.7 0.0 3 23 629 651 627 651 0.91 19 20 7.1e-08 6.3e-06 27.3 1.4 1 23 657 679 657 679 0.99 20 20 1.5e-05 0.0013 20.0 1.5 1 23 685 708 685 708 0.97
Sequence Information
- Coding Sequence
- ATGAGCACGCACGTTACTAAACAAGGAACATTGGAAACTAATAAACTCGCTACAATTAAGACATATGAACGAATAGTGAAACGTGACAGACCTGTTATTACCTCACGGTTTGGTCGACAGGTTGTCAACGAGCAAACACAAGATACTCTAAAAACGACTCAAGAACCCGAGAAACTGTTTCCATGTCCTATGTGTAATAAGATATTCAACAAACTCAGAAATCTAAGAGCTCATGAGAATAATCATTCAAACGAACGTAAATTCAAATGCAGCGTCTGCGAACTACGCTTCAAGAAAAGCGGCCATTTAAAGGTTCACGAGCAACGACATTTGGGGCTGAAAGATTACGCTTGCTCCGAGTGCGAGTTTAAAACGTACAACGTTTCTCTGTTGAATCTCCACATAAAAGTCCGTCACAGAAATAAAATGTACGTTTGCGACGTATGTGGTAAGAGTCTGGCTACCGGTAATACGTTGAAAAAACATATGGAAATACACGGAGAGAGAACATTGAAGTGTACTTCAGAGGGCTGTGATAAAGCATTCTACAATGAAATAGGATTACGTTGTCATATGAAAAGTCATGGACCTATGCGAGGACGAATCCATCTCTGTGATTTATGTGGCTATAGCTGTATTAATAAAGCAAAGTTGAACATCCACATGGAAATTGTACATTTGAAAATAGAGAAGTATAAATGTGAAGTCTGCTCGAAGGTAGTGTCAACTCTCGGTTCACTCAACAATCATCGGCGTATTCACACTGGTGAAAAGCCATTCCGCTGCGATGCTCCGAACTGCGTTAAAGCGTTTAGTGTCAGGTCGCATTTGACTACCCATAAACGCATTCATACCGGAGAACGAAAGTACCAGTGTCTTGAGTGTGATAAAACTTTTACGCAGCAATCTACGCTGATTGTTCACCGACGATTTCACACCGGTATAAAGCCTTACGAGTGTGAACTTTGCCCTAAAGCATTTGTGACAAAAACACTGCTTAATACACATGTGAAGAGTGAGGTGCTACCTCATTGGACCGTCATTCAGGACATATTCGGTGGCAATGCGAGTCCTGTAGTAGTTCGTAGTGTGCGTGATGATACTCCGTTAAGCGCTAATGAACAGAAGAAGCGCGAAAGAAAAACTGAAAACGTGAATACAAACAAATACCCGACCTTAGCCACTCGTGGATCATTTTATATGACTAAGAGAAGCCTTGTCTCTGTTGCGGGCAGTGCAGCTCTTGCTAACAAGAAGCTGTCGGAAACGGAGAAGGAATACACGTGTCCAGAGTGTAAAAAGTCGTTTCGCAGGCTTCGAGCTTTGAAAGAACACGTACTCTCTCATACCGAAGATCGCTTATATCTGTGCAGTATCTGTGATGCTGGCTTCAAGTCTAGCGCTCGTGTTAAAGCGCACGAGCGGCGCCACTTGACGGGCAGACCGCACGCTTGTCCCGAGTGTGATTACAGAGCTCCAGATATTACTCGCATGAACGATCATATAATGATTCACCATAGAACCAAGTCGTTGGTTTGTCACCTTTGCGGCAAAAGTCTTTCCACGCCAGCTATATTAAAAGGTCACATGGAAACTCACGGTGAAAGAACATTTAAGTGTACTGAAGAGGGGTGTGACAAAGCATTCTATAATAAAGGAGGCTTACGTTGTCACATGAGAAGTCATGGAACTTGTAGAAGACAGAGACGTCTTTGCCATTTATGTGGCATTAGTTGTACTGATACTGGAAGCTTCAATGTGCATATGGAGGTTGCACATTTGAATAAAGAGAAATACAAATGTGACTTTTGTTCTAAAGTGGTGTCCACTCTCGGTTCGCTGAAAAACCATCGCCGTATTCACACTGGCGAAAAACCTTTCCTCTGCGATGCTCCGAACTGCGAAAAAGCTTTTAGTGCTAAACCGCTCCTAATCATCCATAAACGCATTCATACTGGCGAACGAAAGTACAAGTGCGATGAATGCGATAAAAGCTTCACTCAACGCACAACACTGATTGTTCACCAACGATCCCACACCGGAATAAAACCTTACGAGTGTGAACATTGTCCTAAAGCATACGTGACCAAGACACTGCTTAACAATCACGTGAAGAGTAAACATGCATGA
- Protein Sequence
- MSTHVTKQGTLETNKLATIKTYERIVKRDRPVITSRFGRQVVNEQTQDTLKTTQEPEKLFPCPMCNKIFNKLRNLRAHENNHSNERKFKCSVCELRFKKSGHLKVHEQRHLGLKDYACSECEFKTYNVSLLNLHIKVRHRNKMYVCDVCGKSLATGNTLKKHMEIHGERTLKCTSEGCDKAFYNEIGLRCHMKSHGPMRGRIHLCDLCGYSCINKAKLNIHMEIVHLKIEKYKCEVCSKVVSTLGSLNNHRRIHTGEKPFRCDAPNCVKAFSVRSHLTTHKRIHTGERKYQCLECDKTFTQQSTLIVHRRFHTGIKPYECELCPKAFVTKTLLNTHVKSEVLPHWTVIQDIFGGNASPVVVRSVRDDTPLSANEQKKRERKTENVNTNKYPTLATRGSFYMTKRSLVSVAGSAALANKKLSETEKEYTCPECKKSFRRLRALKEHVLSHTEDRLYLCSICDAGFKSSARVKAHERRHLTGRPHACPECDYRAPDITRMNDHIMIHHRTKSLVCHLCGKSLSTPAILKGHMETHGERTFKCTEEGCDKAFYNKGGLRCHMRSHGTCRRQRRLCHLCGISCTDTGSFNVHMEVAHLNKEKYKCDFCSKVVSTLGSLKNHRRIHTGEKPFLCDAPNCEKAFSAKPLLIIHKRIHTGERKYKCDECDKSFTQRTTLIVHQRSHTGIKPYECEHCPKAYVTKTLLNNHVKSKHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -