Basic Information

Insect: Brachyptera putata
Gene Symbol: -
Assembly: GCA_907164805.1
Location: OU015474.1:8718430-8724630[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.096 8.5 8.0 0.2 1 23 150 175 150 175 0.92

2 20 0.00051 0.045 15.2 0.3 2 23 180 201 180 201 0.93

3 20 8.1e-08 7.2e-06 27.1 0.7 1 23 207 229 207 229 0.98

4 20 1.7e-05 0.0015 19.8 1.6 1 23 236 258 236 258 0.98

5 20 3.2e-06 0.00028 22.1 0.4 1 23 264 288 264 288 0.97

6 20 5.1e-07 4.5e-05 24.6 1.8 1 23 294 316 294 316 0.98

7 20 2.7e-06 0.00024 22.3 1.0 1 23 322 346 322 346 0.97

8 20 8.7e-05 0.0077 17.5 0.1 1 23 352 374 352 374 0.97

9 20 0.00021 0.019 16.3 3.2 2 23 381 402 380 402 0.96

10 20 1.3e-05 0.0012 20.1 5.7 1 23 408 430 408 430 0.98

11 20 0.00081 0.071 14.5 0.4 1 23 446 468 446 468 0.98

12 20 1.5e-05 0.0014 19.9 2.6 2 23 478 499 478 499 0.97

13 20 9.3e-07 8.2e-05 23.8 6.8 1 23 505 527 505 527 0.99

14 20 0.00038 0.034 15.5 2.7 1 23 533 555 533 556 0.95

15 20 7.8e-05 0.0069 17.7 2.0 1 23 561 583 561 583 0.98

16 20 8.3e-06 0.00074 20.8 0.5 1 23 589 611 589 611 0.98

17 20 0.71 63 5.2 0.0 3 23 621 641 619 641 0.91

18 20 0.00015 0.013 16.9 4.4 1 23 647 669 647 669 0.98

19 20 0.0005 0.044 15.2 4.2 1 22 675 696 675 696 0.96

20 20 9.4 8.3e+02 1.7 0.1 1 23 703 725 703 725 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.096	8.5	8.0	0.2	1	23	150	175	150	175	0.92
2	20	0.00051	0.045	15.2	0.3	2	23	180	201	180	201	0.93
3	20	8.1e-08	7.2e-06	27.1	0.7	1	23	207	229	207	229	0.98
4	20	1.7e-05	0.0015	19.8	1.6	1	23	236	258	236	258	0.98
5	20	3.2e-06	0.00028	22.1	0.4	1	23	264	288	264	288	0.97
6	20	5.1e-07	4.5e-05	24.6	1.8	1	23	294	316	294	316	0.98
7	20	2.7e-06	0.00024	22.3	1.0	1	23	322	346	322	346	0.97
8	20	8.7e-05	0.0077	17.5	0.1	1	23	352	374	352	374	0.97
9	20	0.00021	0.019	16.3	3.2	2	23	381	402	380	402	0.96
10	20	1.3e-05	0.0012	20.1	5.7	1	23	408	430	408	430	0.98
11	20	0.00081	0.071	14.5	0.4	1	23	446	468	446	468	0.98
12	20	1.5e-05	0.0014	19.9	2.6	2	23	478	499	478	499	0.97
13	20	9.3e-07	8.2e-05	23.8	6.8	1	23	505	527	505	527	0.99
14	20	0.00038	0.034	15.5	2.7	1	23	533	555	533	556	0.95
15	20	7.8e-05	0.0069	17.7	2.0	1	23	561	583	561	583	0.98
16	20	8.3e-06	0.00074	20.8	0.5	1	23	589	611	589	611	0.98
17	20	0.71	63	5.2	0.0	3	23	621	641	619	641	0.91
18	20	0.00015	0.013	16.9	4.4	1	23	647	669	647	669	0.98
19	20	0.0005	0.044	15.2	4.2	1	22	675	696	675	696	0.96
20	20	9.4	8.3e+02	1.7	0.1	1	23	703	725	703	725	0.92

Sequence Information

Coding Sequence: ATGTCTTCATCTGAAGAAAACCTTCAGTACTCTTCCAATGAAGATGTTAGTGGTGATGACGACGTGCAAGAAGGTTCAAACCACGATTCGTCAGAATGCGACGAAGACGATGACGACAATGACGAAGGAAACCATCTGACCGAGTACGCTTTTATTAAAATCGAACCGGAGATCTCAATATTAGACGACCAAAGTGATTCTCAGATGAACAATCCGTCATTAAATAACAGTTCTTCGTACAGTGATTGTGACCAAACTAATGCTGATTCTAATCAATCAAGATCTCGAGGTGATCAAAAAGAAGCGTCGGTTAGCGTCGGAGGCAAAGTCTTGAGAAAAAGAAAACCTCGCGTCCCGGTCGTCGACGATACGGTGCAGGAAGTAGTAATCGCAGCCCCAAAGAAACGTAGAAAGCGTATAATCAGAACGACGTCGGGCGTGAAAGAGTATATCTGCTATTTGTGTAAACCGAGGAAGAATTTTGTGAATTCGGAGGAGCTTAAAGCGCACGCTGCGAGTTCTCATCTGGATAAACCACGCTGCATGGAATGTAACCGGCCGTTTCCCGATCTCTCTAGTCTGAAGAGACATTCTGTGGTTCACACGGGTGAAAGAAAATTCAAGTGCGCGGTGTGCGGCAAGCGTTTCACCACGTCGAGCAGCCTCACTGACCACATGGTCACGCACACGGTACAAGAACGCACCTTCCAATGCACGTACTGCAACAAGAGTTACGCCAAGTCGAGCGTTCTTAAAACCCACGTAAAGATCCATCTGGGCGTGCGCGGGTTCCCGTGTCCCGAGACCGGCTGCACGAAGAAGTTCACGTCGTCTAGCAGCCTCAAGGATCATATGGTCACGCACACCGGCGAGCGCAAGTTCATATGCAACATCTGCGGCAAGACTTTCACCGTGGCGTGCAGTCTAACCAACCACCTACGCACGCACACGGGCGAACGGCCCTACCGCTGCGAACACCCCGACTGCGACAAGACGTTCACCCGCCCGTACTACCTCAAGGTCCACGCGATGATTCATACGGGCGTTCGACCGTTCCAGTGCCCCGACTGTCCGAAGTCGTTCCTCGCGTCCAGCAGCCTCAAGAACCACGTGATCATTCATACGGGCAAGGGGCCGGTGTCGTGCGACAGGTGTAACAAGTACTTCTGCAATTCGAGCGCTTTGAAACGACATTCGATCACTCACAGCGAGACCAGACCTTTCGAGTGTCAACAATGCGAGAAAACCTTCAAGCAGTCCGGTCACCTTCACAACCACATGAAACTCCACTCCATCATCGACTCTAACGCCACCGACACTCCCCTCGACAACCCGTACTCGTGCCCGATGTGCCCGAAAACCTTCTTCTGGCCGGGCTCGTTCAGCCGCCACGTCAAATCCCACAACCCAGTCACCACGGAAAAACTCGAAAAATGTCCTATCTGCGTCAAGTGCTTCAAAACGAAACAATTACTCAAACAACACATGGTCGTTCACCTAACCGTCAAACCGTATAAATGCAACGACTGTTCGAAATGTTTCTCGCAAAAAACAGCTCTGACGCATCACATGCGGTTACATTCCGGTCTAACCCCGTTCCAATGTACGCACTGTTCCCTTTCGTTCCCGCTCGCTAGTTATCTCCGCAAACACGTGATCTGGCATCACAAAGAACGGCCGCACGTTTGCGATTACTGCGGTAAACGTTTCGTCGAGCTTCAACGGCTCAAGAATCACCAGTTGACGCACTCGGGCGTTAAACCGTATCGTTGCGCGATATGTTCGCGGACGTTTGCGTACAAGAACAATCTGAGTACGCACATGGCAATACATGGACCTACGGGCGATACACCGTATCTGTGTATCATTTGTAAGGAGGCGTTTGCGGAGGGGGCGGAGTATAAGAAACATATCGCGGTGCACGTTGATGTCTGGCCGTTTAAGTGTACGGCATGTTCGAAGTGTTTTATGAATAGGAGGAATCTGCGTAATCATCTGATGGTTCACACGGGTGAACGACCTTTCAAGTGCGACAGGTGCGCCAAGTGTTTCATACTGAAACACTCATTGAAGAAGCACATGCGCGTCTGCCGTCGCAACAAACCGTACCGTTGCATCTTCTGCGACGATTCGTTTGCTCTACGAGCCGGTCTCGAAGAGCACGAACTGTTACACACCGATGGCCAGTAG
Protein Sequence: MSSSEENLQYSSNEDVSGDDDVQEGSNHDSSECDEDDDDNDEGNHLTEYAFIKIEPEISILDDQSDSQMNNPSLNNSSSYSDCDQTNADSNQSRSRGDQKEASVSVGGKVLRKRKPRVPVVDDTVQEVVIAAPKKRRKRIIRTTSGVKEYICYLCKPRKNFVNSEELKAHAASSHLDKPRCMECNRPFPDLSSLKRHSVVHTGERKFKCAVCGKRFTTSSSLTDHMVTHTVQERTFQCTYCNKSYAKSSVLKTHVKIHLGVRGFPCPETGCTKKFTSSSSLKDHMVTHTGERKFICNICGKTFTVACSLTNHLRTHTGERPYRCEHPDCDKTFTRPYYLKVHAMIHTGVRPFQCPDCPKSFLASSSLKNHVIIHTGKGPVSCDRCNKYFCNSSALKRHSITHSETRPFECQQCEKTFKQSGHLHNHMKLHSIIDSNATDTPLDNPYSCPMCPKTFFWPGSFSRHVKSHNPVTTEKLEKCPICVKCFKTKQLLKQHMVVHLTVKPYKCNDCSKCFSQKTALTHHMRLHSGLTPFQCTHCSLSFPLASYLRKHVIWHHKERPHVCDYCGKRFVELQRLKNHQLTHSGVKPYRCAICSRTFAYKNNLSTHMAIHGPTGDTPYLCIICKEAFAEGAEYKKHIAVHVDVWPFKCTACSKCFMNRRNLRNHLMVHTGERPFKCDRCAKCFILKHSLKKHMRVCRRNKPYRCIFCDDSFALRAGLEEHELLHTDGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00243469;
90% Identity: iTF_00243469;
80% Identity: -