Bput012987.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:24970057-25003857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 40 1.3 1.1e+02 4.4 1.2 3 21 166 184 165 185 0.90 2 40 0.0034 0.3 12.5 0.6 2 21 192 211 191 212 0.94 3 40 0.00017 0.015 16.6 0.2 2 21 219 238 218 239 0.94 4 40 7.3 6.5e+02 2.1 0.3 2 12 246 256 245 258 0.90 5 40 0.082 7.3 8.2 0.2 1 20 279 298 279 300 0.95 6 40 0.00036 0.032 15.6 0.3 2 21 326 345 325 346 0.93 7 40 0.00043 0.038 15.4 0.5 2 21 353 372 352 373 0.94 8 40 0.00068 0.06 14.7 0.6 2 21 380 399 379 400 0.94 9 40 0.0055 0.49 11.9 4.2 1 21 437 457 437 458 0.95 10 40 0.0076 0.68 11.4 1.3 1 20 466 485 466 487 0.95 11 40 0.0064 0.57 11.7 1.0 1 21 509 529 509 530 0.95 12 40 9.8 8.6e+02 1.7 0.1 1 9 538 546 538 552 0.84 13 40 0.16 15 7.2 5.9 1 23 570 592 570 592 0.96 14 40 4.1e-05 0.0036 18.6 0.2 1 20 599 618 599 620 0.95 15 40 0.00021 0.019 16.3 1.0 1 21 646 666 646 667 0.95 16 40 0.052 4.6 8.8 4.5 1 21 674 694 674 695 0.96 17 40 0.0019 0.17 13.4 1.5 1 20 701 720 701 722 0.95 18 40 0.17 15 7.2 2.9 1 21 730 750 730 751 0.95 19 40 1.6 1.4e+02 4.2 3.9 1 14 757 770 757 771 0.93 20 40 5.7e-05 0.0051 18.1 1.0 1 21 791 811 791 812 0.95 21 40 0.00098 0.087 14.2 4.5 1 21 835 855 835 856 0.95 22 40 0.00057 0.051 15.0 1.0 1 22 863 884 863 884 0.96 23 40 0.041 3.6 9.2 0.1 1 21 890 910 890 911 0.95 24 40 0.0006 0.053 14.9 0.6 2 21 920 939 920 940 0.95 25 40 0.33 29 6.3 0.9 1 21 973 993 973 994 0.94 26 40 0.00052 0.046 15.1 1.3 2 21 1001 1020 1000 1021 0.94 27 40 0.024 2.1 9.9 2.2 2 21 1028 1047 1027 1048 0.94 28 40 0.007 0.62 11.6 0.6 2 21 1070 1089 1069 1090 0.91 29 40 0.0018 0.16 13.4 0.8 1 21 1098 1118 1098 1119 0.96 30 40 0.0071 0.63 11.5 0.7 1 21 1124 1144 1124 1145 0.95 31 40 0.0015 0.13 13.7 0.2 1 21 1153 1173 1153 1174 0.95 32 40 1.8 1.6e+02 4.0 3.7 1 21 1198 1218 1198 1219 0.95 33 40 0.015 1.3 10.6 0.3 1 21 1227 1247 1227 1248 0.95 34 40 0.016 1.4 10.4 3.7 1 21 1279 1299 1279 1300 0.96 35 40 7.7e-05 0.0069 17.7 1.0 1 21 1330 1350 1330 1351 0.97 36 40 0.0014 0.12 13.8 0.5 1 21 1359 1379 1359 1380 0.96 37 40 0.00023 0.02 16.2 1.2 1 21 1403 1423 1403 1424 0.96 38 40 0.0029 0.26 12.8 1.2 1 22 1432 1453 1432 1453 0.95 39 40 1.3 1.2e+02 4.4 2.1 1 21 1474 1494 1474 1495 0.92 40 40 1.6e-06 0.00014 23.0 3.8 2 23 1502 1524 1501 1524 0.97
Sequence Information
- Coding Sequence
- ATGGATTCCGGGATAGTGGAACGGAAACGTCATGAACGGGAGCTGAAAGGTCAAGCAGTCGACCTCGACCAAATCAGCCGTGCCTGGTCGATCCATGGGATGAACGTAGAGCATCCGAGAGAAATTGTCCAGCTACTGAATAACTTGAAACCCAACGTCCGGGACATGGTTTTTGCTCAACAGTTACAAGAAAGAGTGAAGTTATACGTAAGAACTGAGAACCTAAAGAACACGCTGGAGACCCTAAACTCAGTGGACATTGAAAGGGTCCTACATGAAATATACGGAGACACGTATGATCAGCTTAGGTTCGCAGTGTTTCCGACTTGCTCAAGATGTGCAGATATCCTGGAGACTCGAGCCGACTTGTTTGGTGTGGTTTCTGGCCAATCATCGCTCTCCAATATGAATAACGTTGCTCCGATTGAAAATGGCTGTATCCCGGATCACGTGCCTCTTCCTGTAGACTGCCAGTTGGCTGCTGATCGCTGGCTTTGTCCCACTTGCAACTCTAGCTTCAAGTACAAGGGCATGCTGAACTTCCACTTGAAACACGAGTGCGGCCGGGATTTACGGTGCAGGACTTGCGACAAGTCGTACAAGGCCATCTCTCACCTGAACGCGCACATCAAATACGAGTGTGGGAAGTTGCTACGGTGTCCGCGATGTGAGAAAAGCTTCTCCGTCCGGACGAACCTCATATCGCATATGTCCTACGTGTGTGGCAAAGACTTGCGGTGCAGGAAATGCGAAAAGGATTTCAAGACGGTGGCGGTAGACGCCACGTGGACGATTGAGGCAAGTGCTTTGGAAACTATTCAAGACGGAAACCGATTTTATTGCGCCATCTGTATGAAAAGCTACAAAGCTAAGAGTGGTCTGAAAATCCACATCACACAGGAGTGTGGCCAAGATCTACGGTGTCCGACATGCAGTAAGCGAACTCACGTCAATTACGAGTGCAACAAGATATTGATGTGTCCAACTTGCAACAAGCGGTTCACGCAGAAGTCTGGTCTGGACACGCACGTGAAGGACGAGTGTGGAAAAGAGCTATCGTGCCCGAAGTGCAGCAAAACGTTCGCTGTGAAGAGAACGCTCAGAGCTCACATCAATCACGAGTGTGGCAGGATACTGATGTGTCCGGGCTGTAACAAAGTGTACAAGCAGAGGACCACGCTGGTTTATCATCAGAGGCACGAGTGTGGAATCGAGTATCGATGTGGAACTTCATTAGTTACATCTGGCGCCCAACGTTGGCTATTGGCCAGCTATCCGGTGTGTCCTACTGATGACGTCACGCAATCATTTCACTGCTTCAAATGCGGCAAATATTACTCGTTGAAGAGGAACTTGACTCGCCATCTGAAATACGAGTGCGGTATTTTCCCCCGGTTCACATGTCCGTCGTGCTCGGCTTTGTTCAAACGGAAGTTTCATCTGGAGAGACACCTTGTCAAGTGCATTGGCTACTCTACACAAACTGATGAGGCGTCAATTATTCAAGGACTCATGCCTCAAGGTTACGAGTGCTTACTGTGTGGTAAACTCTATAAACATCAAGCATCGCTCTCCAATCATACGAAGTATGAGTGTGGGAAAGAGGCGCAGTTCTCGTGTCCGCATTGTCCCCATCGATCAAAACTTGCTGTTAACATAGTACCCATTGTGGCCGGCCCATCATGGAAGCTGTATGACCCTTCTCGTTTCTATTGTTCACGCTGTGACAAGAGCTACAAATTCAAGCACGACCTAAATTTTCACGTGAAGAATCATTGCGGCAAGAAAGAGTATTTCAAATGTTCGGAATGTGGCACATCGTTCACGAAGAACAATCTTTTGGCACGTCATTTGGCATCTGGCACCTATTATTCTGGCGCCCAACGTGTGGTCATCGGCTCAGTTACATGTAGACCTATGTACGCTGCTCATCGATTCATTTGCGCGGGCTGCAACAAAAGCTACCGCCACAAGAAGTACCTCGTTAACCACATCAGAAATGAGTGCTCGAAAGATTCCTTCGAATGTCCCTCGTGCATGAGATGTTTTTCAAGATTTAATTACCTGACACGTCACATCAAACATGACTGTGGCAACTTGTTTGTATGCCCCTCATGTCCGAAGAGATATAAGACTCAGCGCTCGTTTACTCAGCACCTCCACGACGGCTGTGCTAGTAACACCATGTTCAATTGTCCTGATTGTTGCAAGGGTTTCAAGCGATACGCTGGTCTGACTTATCACTTGAAGCATGAGTGCGGGGTATCGTTTAAATGTACTACTTGTGAGATGAGTTTTACACGTAAAGATTGCGGTGTCTTTCGTTCGGTTACCATCAGTTCGGTGAGGAGTTTAGGTGATGCCAGACGCTTCCGCTGCGATATCTGCAATAAGAGCTACAAGCACAAGGTGGATCTCACCACACATGTACAACTAGCATGCGATGGTGGTGTCCAGTCTATTGTTGTCACTCCAGCAGTGGACGTGTACGATGCTTCACGTTTCCACTGTGCCCGTTGCGACAAGAGCTTCAAGCACAAGTTCACGCTCACCAGTCATATGCAGCAAGACTGTGGCAAAGACGCTTTCAGGTGCCCGAAATGCAGCACACGATTCTCGTGGAAAGGAAACTTGACTCAGCACATGAAACGTGATTGTGGTAAATCGTACATCTGTCCGGCGTGTACCCGGGTGTATCAGACGAATAATGCGCTGATCCAACATATTAAACACGAATGTGGATCGAAACAGACGGCTAAATGTCCGAACTGTTCGAAAGATTTCAAGCGCAGTAGAGATCTTACGTACCATATTTTGAATGACTGCGGTGTGAACAATACGTGTGAAGTGTGTAATATTCACATTCGTACATCATATCCTGACCCGCCTTTGAACCGTCAAACACAAAGTCAGCGATTTCAGTGCTCTTCCTGCGTTAAAAGCTTCATCATGAGAACTGCATTGGACTATCACCTGAAGCATGAGTGTGGTAAAGAGCTGCGCTGTCCGACTTGCAGCAAGCGGTTTCAACGGAAAACTACGTTAACGACACACATCAAGTATGAGTGTGGGAAAGAGCTGCGTTGTCCTTCGTGTCCGAAATATTTTCTTTATAAATCCAATTTGTGCCGTCATCTGAAGAATAATGATACCGAGCACTCTTTAGTAATCAGCTCGGTGACGACCATGCACGATTCTTCACGCTTCCTCTGCGTGAGATGCAAGAAGAGCTACAGTAACAAAATGTCTCTGAACGCACACGTGAAGAACGTGTGCGGCAAGAAGGCATCATACAAATGTCCTTCATGCAACATGTCCTTCGCACTGAAGGGCGACTTGTTGCACCACATCAAGCATGGCTGCAAACTGTTCGTGTGTCGGTTTTGTACTCAAGTCTATGAAACTAAGACGGCCTTGCAGAGACATGTGAAGAAGGAGTGTGGACTGAATCAAACGTACGCGTGTCCGAACTGCGGGATGCGTTTCGACGATGTGAGAGAGTTGACGTACCATATGAAGCATAAGTGTTTAGATGCTTCCGGAGCTCAGCATATGGTCAACTCTTCTAGGAACTTCCAGAGTTCAACACCCTTCCAATGCGAGCGCTGCTTCAAGAGTTACAAGTGCAGGAAAACGCTAGTGGTGCATCAGAAACTCGTGTGCGGGAAGAAGGAATCTCATGAATGTCCTTCGTGCTATTCTGTTTTCTCGCTAGAACATAATTTAGCACGGCATATGAAGCAGGACTGTGGGAAATCTTATAACTGCACTGTTTATGATTCTCGCGCGCAGCATACCGTCAACTCTCCTTGGAACTTCCAACGTGCATCACCCTTCCAATGCGAGCGCTGCTTCAAGAGTTGCAAGTACAGGAGTACGCTACTGGTGCATCAAAAGCTCGTGTGCGGAAAAAAGGGATCTCATAAATGTGATTCTCGCACGCAGTATACTGTCGACTCTTCTTGGATGTTCCACAGTGCAACGCCCTTCCAATGCGAGCGCTGCTTCAAGACCTACAAGTCCAAGGACACGCTCGAGGTGCACATGAGACTCGTCTGCGGGAAGAAAGAATCGTTCGAGTGTCCTTCTTGCAAGTCGTCTTACTCTCTCAAATATAATTTGATACGTCATATGAAACTAGACTGTGATGGCTATCGCGCGCACCACGGCGACAACTCTTCTTGGAACTTCCATAGTGCAATACCCTTCCGATGCGAGCGCTGCTTCAAGACTTACAAGTCCAAGGACACGCTCGAGGTGCACATGAAACTCGTCTGCGGGAAGAAAGAATCGTTTGAGTGTCTTTCTTGCAAGTCGTCTTTCTCTCTGAAATATAATTTGATACGTCATATGAAACGAGACTGTGTGTCTTGGATGCACTACGCAAGCGCAGGGTCTCACGAGGATTCACCGCAGCGGTTTCCGTGCGGTCACTGCAACGCGAGTTACAAGTCGGAGAAGCTGCGTACCTACCATCTGAAACACGAGTGTGGTAAAGATTTGCGATGTCCGCTTTGCGAGAAACGCTACTCCAGGAAGTCGCATCTGACTCGACATATCAAAACATTCCATCGTCATGTTTCTTTCCAGTAA
- Protein Sequence
- MDSGIVERKRHERELKGQAVDLDQISRAWSIHGMNVEHPREIVQLLNNLKPNVRDMVFAQQLQERVKLYVRTENLKNTLETLNSVDIERVLHEIYGDTYDQLRFAVFPTCSRCADILETRADLFGVVSGQSSLSNMNNVAPIENGCIPDHVPLPVDCQLAADRWLCPTCNSSFKYKGMLNFHLKHECGRDLRCRTCDKSYKAISHLNAHIKYECGKLLRCPRCEKSFSVRTNLISHMSYVCGKDLRCRKCEKDFKTVAVDATWTIEASALETIQDGNRFYCAICMKSYKAKSGLKIHITQECGQDLRCPTCSKRTHVNYECNKILMCPTCNKRFTQKSGLDTHVKDECGKELSCPKCSKTFAVKRTLRAHINHECGRILMCPGCNKVYKQRTTLVYHQRHECGIEYRCGTSLVTSGAQRWLLASYPVCPTDDVTQSFHCFKCGKYYSLKRNLTRHLKYECGIFPRFTCPSCSALFKRKFHLERHLVKCIGYSTQTDEASIIQGLMPQGYECLLCGKLYKHQASLSNHTKYECGKEAQFSCPHCPHRSKLAVNIVPIVAGPSWKLYDPSRFYCSRCDKSYKFKHDLNFHVKNHCGKKEYFKCSECGTSFTKNNLLARHLASGTYYSGAQRVVIGSVTCRPMYAAHRFICAGCNKSYRHKKYLVNHIRNECSKDSFECPSCMRCFSRFNYLTRHIKHDCGNLFVCPSCPKRYKTQRSFTQHLHDGCASNTMFNCPDCCKGFKRYAGLTYHLKHECGVSFKCTTCEMSFTRKDCGVFRSVTISSVRSLGDARRFRCDICNKSYKHKVDLTTHVQLACDGGVQSIVVTPAVDVYDASRFHCARCDKSFKHKFTLTSHMQQDCGKDAFRCPKCSTRFSWKGNLTQHMKRDCGKSYICPACTRVYQTNNALIQHIKHECGSKQTAKCPNCSKDFKRSRDLTYHILNDCGVNNTCEVCNIHIRTSYPDPPLNRQTQSQRFQCSSCVKSFIMRTALDYHLKHECGKELRCPTCSKRFQRKTTLTTHIKYECGKELRCPSCPKYFLYKSNLCRHLKNNDTEHSLVISSVTTMHDSSRFLCVRCKKSYSNKMSLNAHVKNVCGKKASYKCPSCNMSFALKGDLLHHIKHGCKLFVCRFCTQVYETKTALQRHVKKECGLNQTYACPNCGMRFDDVRELTYHMKHKCLDASGAQHMVNSSRNFQSSTPFQCERCFKSYKCRKTLVVHQKLVCGKKESHECPSCYSVFSLEHNLARHMKQDCGKSYNCTVYDSRAQHTVNSPWNFQRASPFQCERCFKSCKYRSTLLVHQKLVCGKKGSHKCDSRTQYTVDSSWMFHSATPFQCERCFKTYKSKDTLEVHMRLVCGKKESFECPSCKSSYSLKYNLIRHMKLDCDGYRAHHGDNSSWNFHSAIPFRCERCFKTYKSKDTLEVHMKLVCGKKESFECLSCKSSFSLKYNLIRHMKRDCVSWMHYASAGSHEDSPQRFPCGHCNASYKSEKLRTYHLKHECGKDLRCPLCEKRYSRKSHLTRHIKTFHRHVSFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -