Blap056127.1
Basic Information
- Insect
- Brachypalpus laphriformis
- Gene Symbol
- -
- Assembly
- GCA_945910015.1
- Location
- CAMDTZ010003935.1:69000-70923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.9 2e+03 1.5 0.4 2 11 7 16 7 19 0.81 2 13 0.47 1.9e+02 4.7 0.2 2 23 191 215 190 215 0.80 3 13 6.5e-05 0.026 16.9 2.0 1 23 221 243 221 243 0.98 4 13 2.1 8.2e+02 2.7 0.2 3 10 250 257 248 259 0.84 5 13 0.055 22 7.7 0.3 2 17 278 292 278 301 0.83 6 13 7.3e-05 0.029 16.7 4.9 1 23 307 329 307 329 0.98 7 13 2.4e-07 9.4e-05 24.5 0.2 1 23 335 357 335 357 0.99 8 13 0.001 0.4 13.1 1.4 2 21 395 414 395 417 0.88 9 13 0.00015 0.061 15.7 1.9 1 23 442 464 442 464 0.99 10 13 1.7e-06 0.00068 21.9 1.3 1 23 470 493 470 493 0.97 11 13 4.4e-06 0.0017 20.6 3.4 1 23 499 522 499 522 0.93 12 13 0.00016 0.064 15.6 1.4 1 23 540 562 540 562 0.97 13 13 0.087 34 7.0 0.2 1 11 568 578 568 581 0.93
Sequence Information
- Coding Sequence
- ATGAGTGCAGTAGAAAATACTTGCCGGACGTGTGGAAAAACGTCTGAGCAGGAAGATGGCTCGGATCTCTATCCAATGTACACTTCAACGGAGTATTGCAATGAATTGAGAATGGTCCTGGAGGAGTTCGAAATATGGAATTTAAATGTAAGATCTTATATTTTCCACCCACAGATCGCCCAAGGAGACGGCTTACCTCAAAAGATTTGCTTAACCTGTTTCGATAGTTTCTGTCAAATTCACAACTTCCGGATGATATGCCAAGAGGCTCAAATGAATTTCGGCGAACACTGCACTGGTCTCGATATCATAATCAAACTGGAGCCGGAATTTGGCGATATTGATGTAGATTTTCCAGAAGATTTCGAGGGCGAACAAACGATTACCGTTCAGGAACATTATGCGTTTCCTGGTGATGAAAAATCAAAAGCACCAGACCCCGTCCTGGAAAAGAGAACGTGTGAGAAACTCTTGGAGACTGTCAATTCCGATGAGGAAGGGCGCAAAGAGAGAGATCGCCGAGATGCGCTCGAAGAAATGAATGCAGTGATGCCCGAGTTCAAACGGTTTCAATGCGAGTTCTGCATGGACGTCGTGAGTTTTGATGATCCCGATCTGTTAAATGAGCACTACAATGTGTTGCATTCTTCGGAGTTGCCCTACCCGTGTCCCAAGTGCGAAAAGTGCTTCGACACCAAGGGGAAACGAAACAGCCATGCTAGGGTCCACTACCGCATTATACTGGATTGTGAAATTTGCGGCAAGAAGGTGAGGGGTGGCAAACGGTACATGGCTCAGCACAATGAGTTGCATCATATCGAGAAAGCTCGCGAATGCCCAACGTGTGGCAAGAACTTTAACAAAATCACATTAAAGAGGTTCAACTACCACATGAGCTGGCATGACGATACCAAGTTGCACAAGTGCAAGTATTGCGAGAAGAAGTTCATTCAGGTCACGCATTTGGTGGTGCACGAGAGGACACATACCGGAGAGAGCCCTTACGTATGCAACGAATGTGGAATGGGATTCAAGAATTCTGGTCTCTTGAGCAACCACATGAAGATGCATGGAGCGAAAGAGTTGGATTGTCCAAATTGTCCCAAGAGTAAGTTTCTAGACTTTCGGCAACATGGTTTGAGGATTCACATGCAACTCCACGATCCAAACAGAAAGGTACCTCGCTGCGAACTGTGTGATAAGAACTTCCGCTCCTTAATGAATCTGCGTTTGCACAATTACAATCGACACGACGGACCATCCTCAACGGCTATTCTAAACATTTTGAAGAAAAGGCAGCAGAAGAGCGCGCTCATAAAACCATACAAATGTAGCAAATGCCCACAGGCGTTTGTGCTGCACCAGCAGTTGGTGAAACATTTGACAACCCATGAGGAGAATAGGCCATATACTTGTGAACTATGTGGCAAGTCATTTAAACGAGATGCCCATTTGAAATTACATGTCGACACACTGCATTTCAATAAGAAACCACACAAATGCCATTTGTGCGGATGGGCATTTTCACAAAGAAGCAATCTCAGGGAACACTTTGCTTCGAAACATGATGCTTATCATCCTTGTAATGTTTTGGACTGCCTTACAGACAAGAAAGATCACAAGTGTGATATTTGTGGAAAGGCGTTTGCCATTATCAAGACTCTCAGGACTCATAAGCTCAAGCATTTGGATGTGAAACCATTTGTCTGTACCATATGCAACAAGGGATTCAGACTCATGGGTGTCCTAAAATGTAAGTGA
- Protein Sequence
- MSAVENTCRTCGKTSEQEDGSDLYPMYTSTEYCNELRMVLEEFEIWNLNVRSYIFHPQIAQGDGLPQKICLTCFDSFCQIHNFRMICQEAQMNFGEHCTGLDIIIKLEPEFGDIDVDFPEDFEGEQTITVQEHYAFPGDEKSKAPDPVLEKRTCEKLLETVNSDEEGRKERDRRDALEEMNAVMPEFKRFQCEFCMDVVSFDDPDLLNEHYNVLHSSELPYPCPKCEKCFDTKGKRNSHARVHYRIILDCEICGKKVRGGKRYMAQHNELHHIEKARECPTCGKNFNKITLKRFNYHMSWHDDTKLHKCKYCEKKFIQVTHLVVHERTHTGESPYVCNECGMGFKNSGLLSNHMKMHGAKELDCPNCPKSKFLDFRQHGLRIHMQLHDPNRKVPRCELCDKNFRSLMNLRLHNYNRHDGPSSTAILNILKKRQQKSALIKPYKCSKCPQAFVLHQQLVKHLTTHEENRPYTCELCGKSFKRDAHLKLHVDTLHFNKKPHKCHLCGWAFSQRSNLREHFASKHDAYHPCNVLDCLTDKKDHKCDICGKAFAIIKTLRTHKLKHLDVKPFVCTICNKGFRLMGVLKCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542393;
- 90% Identity
- -
- 80% Identity
- -