Blap048655.1
Basic Information
- Insect
- Brachypalpus laphriformis
- Gene Symbol
- -
- Assembly
- GCA_945910015.1
- Location
- CAMDTZ010002625.1:411938-412612[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 1.4e-06 29.8 0.0 2 40 17 55 16 60 0.92 2 2 5.8 6.3e+03 -1.1 0.0 27 44 116 134 116 135 0.85
Sequence Information
- Coding Sequence
- ATGGAAAAATCTGAAGGAAGGCCAAAACGTGCTTTCCATAAGTACTTAGAAGAGGCACTTAATGAGGCCTTGAAAAAGATCAGGGAGGGAAATTGGCCAACAAGGAAAGCAAGCAAGGAATTCCGAGTCCCTAGAACAACAATCCAAGACCGAATTCATGGGAGGATTGTGGAAAAGCCAAGACAAATGGGGCCGGATACTGTGCTTAGTGGAGCAAAAGAACAGCCCCTGGTGGACTGGCTTTTAAACTTAGCAAAATGTGGACTTCCACAAAAACCAACAGATCTGCTAGACACGGTGCAAAAAATCATTTTAGAAGAAAATCGAAAAACACAATTTAAAGACGGTCTACCAGGAACGACTTGGTACTACGGGTTCCTAAAGCGTCATCCTGAACTGTCCCTCAGAACACCAGAAGGACTCTCAAAAGGTCGGGCGATAGTCTCCGAAGAGTCGGTCAGGATGTGGTTTTCAGACCTAAAAAATTATCTGCAGGAAATCGATGCTGCAAATATTCTTGAAGACCCTTCCAGGATTTTTAATGAGGACGAAACATCGTTCAACATGTCTCCGAAATCTGGGACTGTTTTGGCACCTAAATGCTGGAAAAACCTTTATAAGGTTAGCCAAGGCAACGAAAGGCCACAGAAGcagaagagctgcacggaggtgtga
- Protein Sequence
- MEKSEGRPKRAFHKYLEEALNEALKKIREGNWPTRKASKEFRVPRTTIQDRIHGRIVEKPRQMGPDTVLSGAKEQPLVDWLLNLAKCGLPQKPTDLLDTVQKIILEENRKTQFKDGLPGTTWYYGFLKRHPELSLRTPEGLSKGRAIVSEESVRMWFSDLKNYLQEIDAANILEDPSRIFNEDETSFNMSPKSGTVLAPKCWKNLYKVSQGNERPQKQKSCTEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00241432;
- 90% Identity
- iTF_00241434;
- 80% Identity
- -