Blap002569.1
Basic Information
- Insect
- Brachypalpus laphriformis
- Gene Symbol
- -
- Assembly
- GCA_945910015.1
- Location
- CAMDTZ010000072.1:230243-231247[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-14 3.4e-11 44.6 0.0 3 43 169 209 167 211 0.91 2 3 0.028 31 6.3 0.0 27 37 240 250 231 255 0.87 3 3 1.7e-16 1.8e-13 51.9 0.0 3 41 278 316 276 318 0.94
Sequence Information
- Coding Sequence
- ATGCGTTTCTTGTGCATGGTTACTGAAGACCGCAAACCTATAAACATTTACCCCAAATTTTACAAAAGAAAAAAAAAAACTAAAATCGTCCTTTTTTACTTTCAGGATCAAACTGTTGCGGAAAACAACAGCGTACGCGAACTGGAATTTCTTGAAGTTTATAATGAACAAGAAAAAATCAGTTACACAATTGAGAATATCACACCAACCAATCCCAACGAATACATTCTCACAGAAAGTTCTGGCACCTTTACCCTCACACCAAATGCAAAAATCGACAGCACTGAAGTTGGAGCCCTCGTTGAAAAAGGAGAAGAAAATAATCCCATGATGGAACACTACGTGGGCGATCCAATAGGAGAAAGCAGCGAATCCTCGAGTACCGACATAAAAGAAGACAAATCTATTAAAAATCTTAAAGATGAATTTAGTGAATTTCAAGCACTTAGTCCAGACGATTCGAAAGGATATCAAAACTTTAACGAAACTCAATCGGCGCGTGTCGAAGCATTAGAAAATGCAGTTATCGCTGTTGTCGATGAGGGTATGAGTCTACAGAAAGCCGCCATCAAGTATAACATTTCAAAAACTGTTCTTTGGCGACGAGTGAAAAAGCATCCGCTTTACATGAAGACTACCCGTGAGAATCCGCTTATAACAGCTGCATGTGAGCGCTTGAAAAACGGAGATTCGCTGAAAAGTATTAGCCAAGCACTAGATATTCCCATGTCTACATTACATCGACACAAAGTACGGCTTGCACAGGAAGGACGTCTGCCGGAATATGTGACATTTAAGAAGCGTGGTCCAATGTCAAAGGAAATGCTAAAAGAAAAACTCACGAAGGCAGTGCAAGCTTGCCTAGGCGACGGAATGTCACAGAATCATGCCGCAAATGTGTTTGATGTGCCAAAAAGCACTTTGTGGCGACATTTGCAAAAGAAAATGTATCGAGCAGATAGTTCGAACGATATAAGCATTAAGGAGGAGATCGTTTTGCCGTAG
- Protein Sequence
- MRFLCMVTEDRKPINIYPKFYKRKKKTKIVLFYFQDQTVAENNSVRELEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNAKIDSTEVGALVEKGEENNPMMEHYVGDPIGESSESSSTDIKEDKSIKNLKDEFSEFQALSPDDSKGYQNFNETQSARVEALENAVIAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGDGMSQNHAANVFDVPKSTLWRHLQKKMYRADSSNDISIKEEIVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -