Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: -
Assembly: GCA_949775065.1
Location: OX459113.1:11933248-11935526[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.4 1e+03 2.1 1.7 1 23 223 247 223 247 0.90

2 13 0.014 3.3 9.9 3.2 1 21 253 273 253 276 0.80

3 13 3.1 7.3e+02 2.5 0.5 1 9 281 289 281 291 0.87

4 13 0.59 1.4e+02 4.8 3.6 1 13 310 322 310 334 0.77

5 13 2.6e-05 0.006 18.5 3.9 1 23 340 362 340 362 0.98

6 13 0.0041 0.97 11.6 1.1 1 23 368 390 368 390 0.95

7 13 0.00079 0.19 13.8 1.9 1 23 396 418 396 418 0.95

8 13 5.8e-05 0.014 17.4 1.1 1 23 424 447 424 447 0.92

9 13 8e-06 0.0019 20.1 0.8 1 23 462 484 462 484 0.99

10 13 2.2e-06 0.00051 21.9 1.5 1 23 489 512 489 512 0.95

11 13 0.00028 0.067 15.2 0.5 1 23 518 540 518 540 0.96

12 13 2.9e-06 0.00069 21.5 1.2 1 23 545 567 545 567 0.99

13 13 1.1e-06 0.00027 22.8 1.9 1 23 573 595 573 595 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.4	1e+03	2.1	1.7	1	23	223	247	223	247	0.90
2	13	0.014	3.3	9.9	3.2	1	21	253	273	253	276	0.80
3	13	3.1	7.3e+02	2.5	0.5	1	9	281	289	281	291	0.87
4	13	0.59	1.4e+02	4.8	3.6	1	13	310	322	310	334	0.77
5	13	2.6e-05	0.006	18.5	3.9	1	23	340	362	340	362	0.98
6	13	0.0041	0.97	11.6	1.1	1	23	368	390	368	390	0.95
7	13	0.00079	0.19	13.8	1.9	1	23	396	418	396	418	0.95
8	13	5.8e-05	0.014	17.4	1.1	1	23	424	447	424	447	0.92
9	13	8e-06	0.0019	20.1	0.8	1	23	462	484	462	484	0.99
10	13	2.2e-06	0.00051	21.9	1.5	1	23	489	512	489	512	0.95
11	13	0.00028	0.067	15.2	0.5	1	23	518	540	518	540	0.96
12	13	2.9e-06	0.00069	21.5	1.2	1	23	545	567	545	567	0.99
13	13	1.1e-06	0.00027	22.8	1.9	1	23	573	595	573	595	0.99

Sequence Information

Coding Sequence: ATGTGCAGTGCATTTAAATTAGACCTAAGCAAATATAATATAGAAGATGTGTGCAGAACGTGTGGTAAATGCGACGTTATCACGTCTGTGGGTCTCGTAAATATTTTCTCCGCTGACCCACAAGCAGAGGGAAAGAATAAACTACTCCGGGAGTTCGATTTATGGAAACTATGTATCTCCGAAGATGATGGTCTTCCACAACAAGTTTGTAAACAATGTTTTGGCAAATTTACTCTCGTCAATAATTTCCGAAGACAGTGTGAAAACATTCAAAGTGCTTTTAAAATTCTACTCTACGAGAAGCAAAAATTAGCCAAAAAGACTGATAAGAGACCCGATCCAGTGCAGCCGAAACTCGAAGCGCACCTGTTTGATGATAACGCTGATTTGAATTGCTTCGACGAAATTGCATTTGAAGATGCCGAATATAAGAATATTAAGTTCTTCGATGTGCAACCGCGTAAGGATACGGAAAGTAAAGAAGATTACCAAGAAGAGGATAAAAATGACGAATCAATGTGCAATGAGCTGGATGGTGACGATTGGGACGTATCAAAGGACATATTTCCCAAGGTAGAATACGGCAACGATGACTCAAGCTTAAGTTCCGATTTACTTAGTTCGGACGATGAAAGGCGGCAAAAGggaaaaacaaaacgaaaccaaTATAAATGTGAATTTTGCAAGAACTTTTGTCTGGAAAATCAGGAAGAGCTGGATACACATGTTAAGGAAATACACTCTACGAGTACTCCGTATACATGCCCATTGTGCACCAAATCGTTCAGCAATGCCAAGCAAAGGAACTGTCACTTCATGGTAAGCCACAAGTGGAAGTCGCACGAGTGTGACATTTGCCACAAAATGATTAAGGGCGGCAAACCGGGCTTAAAAAATCACAAGGATAACGTTCACAATAAGTCGAACCATGAGTgcaatatttgtaaaaaaaaatttgagaatATATCGTTGAGTCGGTTTAGATATCACTTGCGCTGGCATGACAGTTCAAAGCTGTTCTCGTGCAAATCTTGTGACAAAACCTTCGTAACACGATATCATATGGAGGAGCACGAACGGACGCACACCGACGAAAAGTCTTTTCTCTGCAGTATATGTGGTCTAGGTTTGCGTTGCAAACAAAACTTGATTTGGCACATGAAGACGCATACAGGAGAAAGGACCTATCAGTGTAATCAGTGTGACAAATCTTTCCCAACACCAACAGCTGTGGCGTGCCACAAAAAAACCCACAGTAACGAGAAAAAGCATGAGTGTGATATTTGCAGCAAGCTCTTCAAAACGAAAGGAAGTCTCAAGACGCACATTGGTAATGTACACAAGGTGGACTTTAACGAAGGCACAGTGAACTCCTCGCCACGTTATCAATGTCAACTGTGTCCCAGAAACTTCATCTTCGAACGCGATCTCATAAAGCATCTTCGTACACATGAACACAGACGTCACATTTGCGACGTATGCGGTCTGTCGTACATTCAGTCTTCCCATTTGAAAAAGCACATGGAATCTGTGCACTTGAATTTCAAACCACACGTGTGTTCTATATGCGGTAATGCTTTTCCATTCGAATATAATCTCAAACAACACTCGTTGATACATAAAGAAAAAGAATTCAAGTGTATGGTCTGTGATAAGACGTTTACGTTGCTCCCATCGTTGCAATCACATCAGAGAACTCACACGGGTGAGAAGCCTTACAAGTGCCATCTCTGCGAGAAAGCATATGCCAATAGAGGGAATCTGAAAAGTCATATGGAGAAGCATTTGTTGGAGAAAAAGCAAAATCATACATTTTCGCAAATTATTTTACCCGTGATTCCGTCATCTGTAGAtaatccaccaccaccaccagcgtTTAACCTTTATGACATAAGCAATACAAATACGAATCAACAAGTTTATAACAAtcaattataa
Protein Sequence: MCSAFKLDLSKYNIEDVCRTCGKCDVITSVGLVNIFSADPQAEGKNKLLREFDLWKLCISEDDGLPQQVCKQCFGKFTLVNNFRRQCENIQSAFKILLYEKQKLAKKTDKRPDPVQPKLEAHLFDDNADLNCFDEIAFEDAEYKNIKFFDVQPRKDTESKEDYQEEDKNDESMCNELDGDDWDVSKDIFPKVEYGNDDSSLSSDLLSSDDERRQKGKTKRNQYKCEFCKNFCLENQEELDTHVKEIHSTSTPYTCPLCTKSFSNAKQRNCHFMVSHKWKSHECDICHKMIKGGKPGLKNHKDNVHNKSNHECNICKKKFENISLSRFRYHLRWHDSSKLFSCKSCDKTFVTRYHMEEHERTHTDEKSFLCSICGLGLRCKQNLIWHMKTHTGERTYQCNQCDKSFPTPTAVACHKKTHSNEKKHECDICSKLFKTKGSLKTHIGNVHKVDFNEGTVNSSPRYQCQLCPRNFIFERDLIKHLRTHEHRRHICDVCGLSYIQSSHLKKHMESVHLNFKPHVCSICGNAFPFEYNLKQHSLIHKEKEFKCMVCDKTFTLLPSLQSHQRTHTGEKPYKCHLCEKAYANRGNLKSHMEKHLLEKKQNHTFSQIILPVIPSSVDNPPPPPAFNLYDISNTNTNQQVYNNQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -