Bscu047961.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459115.1:87412055-87414643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.037 8.7 8.6 0.1 2 23 15 36 14 36 0.95 2 17 1.1 2.6e+02 3.9 6.5 1 23 42 65 42 65 0.90 3 17 0.00033 0.077 15.0 0.5 3 23 70 91 68 91 0.94 4 17 0.0078 1.8 10.7 0.2 3 21 101 119 99 120 0.91 5 17 6.7e-05 0.016 17.2 0.8 1 23 128 150 128 150 0.97 6 17 0.18 43 6.4 4.5 1 21 156 176 156 178 0.87 7 17 0.00025 0.059 15.4 2.6 1 23 184 206 184 206 0.95 8 17 0.88 2.1e+02 4.3 4.7 2 22 213 233 212 233 0.93 9 17 1.8 4.1e+02 3.3 4.0 1 23 476 499 476 499 0.94 10 17 0.0031 0.73 12.0 1.4 1 23 523 545 523 545 0.96 11 17 1.2 2.8e+02 3.8 2.6 1 23 553 577 553 577 0.92 12 17 0.00035 0.082 14.9 0.2 2 23 582 603 581 603 0.97 13 17 0.00092 0.21 13.6 0.1 2 22 615 635 614 635 0.93 14 17 0.00033 0.076 15.0 0.2 1 23 643 665 643 665 0.93 15 17 1.5e-05 0.0034 19.3 1.7 1 23 671 694 671 694 0.97 16 17 6.5e-05 0.015 17.2 0.2 1 23 700 722 700 722 0.98 17 17 0.0023 0.53 12.4 1.1 1 21 728 748 728 749 0.94
Sequence Information
- Coding Sequence
- ATGatggtacaaataaaaaatgacaaATCCGGTCCGAAACTAGTCTGTCCAATTTGTGATAAGGCGTTGCTGTCCCTCAACGGGTATATGAAACATATGACAAAGCATGAACAACCTGGCGGATTCTGTTGCAACTACTGTGAGGATCGTTTTTGTTTTGAAGATCTGCTTAAGAGGCACAAAGATGAGAAACATAAAGTTCTCGCCTGCCAAATATGCCATGCGACATTCTCCACCGCACAGGAGTATCGCACGCATATCAAGGATATTCACAATGGCGTCGATCGTCCAATGTCTATATGTGAAAAATGTGGGCTAGAATTCAAAACACAACAGGCAGCGAAAAGGCACAAAGAAACTCAGTGCGGCCAGATAAAGCCGCATCCATGCGATGAATGTGAAATGGCATTTTACACTAAATACAACTTGGCCGAGCACAAGAAGATCCACAGGGGAGAAAAGAAGTTCTGCTGCAGCTATTGTGGCAAGAGTTTTCTTAGCAATGGAAGACTGGTGATACACGAGAGATGTCATACTGGAGAAAAACCCTACAAATGTGATGTGTGTGGAAAATGTTTTGCTCATCGTGAAAGCATTGTTACCCATTCTTCTATTCATACGGGAGTGAAGTTGGTTGTGTGCAAGTGCTGTGGAGCAAGGTTCTCATGCCATTCTAATCTGATCAAGCACCGGCGGACAAGACAAGGTACTTGTGGTTTGGCGATCTACGACACAACCAAGGAGACGAAACGAACTCGAAATTCAAGAATTCCTGCGAGCCTAATGTCATCTGAGATAAGAATCGTACAAGCGAGTAAAGTCCTGGACCCTAAGGAACAGCAAAAAAAGCCTAAACCTGCTGCTAAATCAAACACCTCAAAACCCAAAACACCCAAACCCGATTTAGATAAGGAAGAAATTATTATCAGAACGCAAATACAAAAACGGGTCACCCAAATGGTTGTTGATACCGAAAAGGAACCACCGGAGATGGCTGAGAATGATTCTGCATCTGATGATAATAGCGATAGTCCGGGATTGGAATATCCAATAGACTCAGACGATTCTTGTGACAGTAAAAAGCTGGATATTAAACCTCGCAATCTAGAAACAATTTTGACTGATTCTACGGTGAAAAAAGAAGAGCAAAACCCTATCGAGCTAAATGTTTGCACTGACAAAATTCAGACTGAAAACAATATAATAATCAAAGCCGAACTTGTAGCTAAAGTAAAAGTCGAATTACCGCACATTAAACCCTGTAGAGTGATTCTTGAAGAAGCAAGATTCAAATATCCACATTTAAAAGCTTTTAAACCTACATTGCAGTCACACAATACAACAAATGACAAACTTAAACCCAAACTCAAGCGTCATCGTATAGCTTTGCGTAAAAAActcagattttttaaaaaagatcgCACCTACGACTGCAAGCATTGTGTAAAGATCTATCACATTCGAAAGCCCTACGAAAAGCATCTCCGCGACCAACACAACATATCCGAAGAGGAAATACGTGTTATGTTCAAGGACGAAGATAATGACATTCCCGCCGACCTGGTGCATCGCTGCCCAATATGTTCGAAAATCTACATAATGGCAAAACGGCTGAAAACTCACATAACTTATCATGGTACCGATGGTAGTCTTATACACAAGTGTCCGTGTTACTGTAAGATTTACTTCGGCACAAAAGAGGAAGCAGTGGAGCATGCCAAGCTCAAACACAAATCGTCCATTTATTGTGAGATCTGTGACAAGTACACACAATCTCCGGAAGCCCTTAAGATACATAAACGGACTCACTCTGAGCGTAGAAAGCAAACGGATCGGAATTTAATTTGTGACAAGTGTGCCAAATCATTCGCAAGTAGAACTGCTTTGACCGATCATACTCGATCCAATTGTGGACAGAATCCACTGTATCCCTGTGATATATGTGATAAGAGATTTAGTACAGCTGGAATTTTGAAGACTCACTCGCTGCTGCACAAGGATCAGACGCCATTTGTGTGTGATAAATGTGGAAaggcatttaaaattaaagcgcAGTACAAGACACATTTACGATATAAACACACAAATTATAAGCCGTTTAAGTGCGATCTCTGTCCGAAGCAGTATCCGTACCGAGAAAGTCTGCTCACCCACATGGCCATCCATACAGGGCTTAAACGTTACGCCTGTAACGGATGCAGTAAACGTTTCACGTGTATTTCTAACCTTCAGGCGCATCGAAAAGTTTACGCCGATACTTGTGGACAGCAACCGTTAAATTCTAAACCTAGCCAGTATATAGGAATGCAAAAAGGCTTACTCTTAATTGGCACTAAACCGACtttttaa
- Protein Sequence
- MMVQIKNDKSGPKLVCPICDKALLSLNGYMKHMTKHEQPGGFCCNYCEDRFCFEDLLKRHKDEKHKVLACQICHATFSTAQEYRTHIKDIHNGVDRPMSICEKCGLEFKTQQAAKRHKETQCGQIKPHPCDECEMAFYTKYNLAEHKKIHRGEKKFCCSYCGKSFLSNGRLVIHERCHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGARFSCHSNLIKHRRTRQGTCGLAIYDTTKETKRTRNSRIPASLMSSEIRIVQASKVLDPKEQQKKPKPAAKSNTSKPKTPKPDLDKEEIIIRTQIQKRVTQMVVDTEKEPPEMAENDSASDDNSDSPGLEYPIDSDDSCDSKKLDIKPRNLETILTDSTVKKEEQNPIELNVCTDKIQTENNIIIKAELVAKVKVELPHIKPCRVILEEARFKYPHLKAFKPTLQSHNTTNDKLKPKLKRHRIALRKKLRFFKKDRTYDCKHCVKIYHIRKPYEKHLRDQHNISEEEIRVMFKDEDNDIPADLVHRCPICSKIYIMAKRLKTHITYHGTDGSLIHKCPCYCKIYFGTKEEAVEHAKLKHKSSIYCEICDKYTQSPEALKIHKRTHSERRKQTDRNLICDKCAKSFASRTALTDHTRSNCGQNPLYPCDICDKRFSTAGILKTHSLLHKDQTPFVCDKCGKAFKIKAQYKTHLRYKHTNYKPFKCDLCPKQYPYRESLLTHMAIHTGLKRYACNGCSKRFTCISNLQAHRKVYADTCGQQPLNSKPSQYIGMQKGLLLIGTKPTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -