Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: -
Assembly: GCA_949775065.1
Location: OX459113.1:7275608-7287364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.36 83 5.5 0.1 2 19 262 279 261 281 0.94

2 10 7.7e-05 0.018 17.0 0.3 3 23 295 316 294 316 0.97

3 10 0.0014 0.33 13.1 0.3 3 23 324 345 323 345 0.97

4 10 0.017 3.9 9.7 1.3 2 20 355 373 354 376 0.91

5 10 1.4e-05 0.0033 19.3 3.6 1 23 385 407 385 407 0.97

6 10 1.3e-07 3.1e-05 25.7 0.2 1 23 413 435 413 435 0.98

7 10 0.00012 0.029 16.4 1.8 1 23 441 463 441 463 0.98

8 10 2.8e-08 6.6e-06 27.8 2.6 1 23 469 491 469 491 0.99

9 10 0.00018 0.041 15.9 3.2 1 23 497 519 497 519 0.97

10 10 4e-05 0.0094 17.9 5.2 1 23 525 548 525 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.36	83	5.5	0.1	2	19	262	279	261	281	0.94
2	10	7.7e-05	0.018	17.0	0.3	3	23	295	316	294	316	0.97
3	10	0.0014	0.33	13.1	0.3	3	23	324	345	323	345	0.97
4	10	0.017	3.9	9.7	1.3	2	20	355	373	354	376	0.91
5	10	1.4e-05	0.0033	19.3	3.6	1	23	385	407	385	407	0.97
6	10	1.3e-07	3.1e-05	25.7	0.2	1	23	413	435	413	435	0.98
7	10	0.00012	0.029	16.4	1.8	1	23	441	463	441	463	0.98
8	10	2.8e-08	6.6e-06	27.8	2.6	1	23	469	491	469	491	0.99
9	10	0.00018	0.041	15.9	3.2	1	23	497	519	497	519	0.97
10	10	4e-05	0.0094	17.9	5.2	1	23	525	548	525	548	0.98

Sequence Information

Coding Sequence: ATGGTTTCTATCTGCCGCTTGTGTGCTTCTCTGAAGAAAACGAAGAATTTGACGTTTATTCGAGACACCAACCATGATTTGTGTCAAAAACTATCTAAGTGCTGCCAGCTCACCATTGACCTGGATGATGTGCTTCCGAAGGGTGTGTGTCCCGAATGTGTtcgctgtgtgaatatatcttTTGAATTCTACGAGAGGGTACATGAATCGCAACAATCTCTGGAGAAGCTGCTGAGTGGAGAGTCATCAGAAGGAACGGATATAATTGTGGATGATAATGCAAAGGAACGAAAGTCTCTAGCTCTGATGGCAGCTGCAGCTGCTGATGAAAATGATGGATCTTCTGAAGAGCAGAATGTAACCAACGAACTAGAGGCTACGAGTAACAATGACGATAGCGATACAGTAACACAGGTAATTAATCAATTACTAAGCGAAAAAGATGAGCAAAGTGCGTATCTAATTGTGGGCTCAGATACTGAAGATGATAAAAAACCAGAAGTGATATCTGAAAACGAAATCGATGAGACTAACACTTCGGCTGACGACATGATCGAAACGGGTGCCTTTGCGGGAGTTGAGTTCATCGAAGAAGACGATTTCGAACACAGCCATTATGAAATCatagaagaagaagaggaagaagGACTGCCAATGGAATATCAGGTAAGCTTTGAGTCACAAGATGcagaagaaaatgtattagatgAGGAGTGCAAAAAACCATCCACTTCTTTGTCGGCCAGTCATGAGAAAACCGACACCTGGGTAGATTATCCATGGAAGTGTGTTAGCTGCTTGGAGGTGTTCTATTCTGCTAAACACTTAATCGAACATAATGAGTGCGCACATCGCCTGCGTGGCATAGACATGGAGTGGTTATGCGTGGATTGTCAAAAACCATTTCCACGTTACTATACGTTGATTAATCACATTCGTCAGCGACATCGATCACATTTGGCTTTACTGTGTGACATTTGCAATGAGAGTTATATATCATTCAAAGATTTAGCACAACATCGTCGGTTAATGCACACTGAAGCGGAGAATCAGATCATGTTGATATGCTTGAAGTGTGGAAAGGGATTTCAGACTCTAAATTCACTGCAAATTCATGGCAAATGCCATCTGCCAGATGATGAACGATTGCTATTTGCTTGCAATATATGCAATAAAAAGTTTCGCACCAAATCGAACTTGACATTTCATTACAAAATGCATGCCGgaACTCGTGACTACGTCTGTGACCAATGTGGAAAAAAGTTTATACAAAAGGCGAATCTGGAAGAACATTTGTTAACACACGTTTCCTTCACTCCATATGAGTGTTCATTGTGCAATCAATTATTTAAAACTCCTGATCGATTGACCAGACACAAACAACGTCATACGGATGAGAAACCTTATAGCTGTACTGGATGTGATAAAACTTTTCGTACAAAAGATTCGATGACAACGCATATGAGGACCCACACTGGGGAAATGCCATTCGCTTGTGAATTCTGTCAAAAACCGTTCAGATTTAGAAGCACCTTAATGACCCATCACAACGTTCACACCGGTACAAGACCCTACTCCTGCCTCGAGTGCGATCACCACTTCACCAATTGGCCAAACTACAACAAGCACATGAAACGTCGCCACGGAATTGATGTGGCTAGTAAAAATCCACGTGGTAAAAAACCCGCTAACCCACCGGTACctttaaaaaaaccaaacaatcGTTCTACCACCACGACCAAATCGAATTTCACCGCTAAGCGTCAAGCGGATGAGGAAATCCGCGATGAAGAAGCAGATGACATTCCTGCTGACTGCGAACCGGACGATGAAATTAAGATTGCAATACCAAAGCAGGAAGAGGAAGACCCAGGCGACAGTTGCGAaacgatttaa
Protein Sequence: MVSICRLCASLKKTKNLTFIRDTNHDLCQKLSKCCQLTIDLDDVLPKGVCPECVRCVNISFEFYERVHESQQSLEKLLSGESSEGTDIIVDDNAKERKSLALMAAAAADENDGSSEEQNVTNELEATSNNDDSDTVTQVINQLLSEKDEQSAYLIVGSDTEDDKKPEVISENEIDETNTSADDMIETGAFAGVEFIEEDDFEHSHYEIIEEEEEEGLPMEYQVSFESQDAEENVLDEECKKPSTSLSASHEKTDTWVDYPWKCVSCLEVFYSAKHLIEHNECAHRLRGIDMEWLCVDCQKPFPRYYTLINHIRQRHRSHLALLCDICNESYISFKDLAQHRRLMHTEAENQIMLICLKCGKGFQTLNSLQIHGKCHLPDDERLLFACNICNKKFRTKSNLTFHYKMHAGTRDYVCDQCGKKFIQKANLEEHLLTHVSFTPYECSLCNQLFKTPDRLTRHKQRHTDEKPYSCTGCDKTFRTKDSMTTHMRTHTGEMPFACEFCQKPFRFRSTLMTHHNVHTGTRPYSCLECDHHFTNWPNYNKHMKRRHGIDVASKNPRGKKPANPPVPLKKPNNRSTTTTKSNFTAKRQADEEIRDEEADDIPADCEPDDEIKIAIPKQEEEDPGDSCETI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -