Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: salm
Assembly: GCA_949775065.1
Location: OX459112.1:183918168-183929859[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-06 0.00041 22.2 1.7 1 23 285 307 285 307 0.98

2 9 1.9e-06 0.00046 22.0 1.7 1 23 313 335 313 335 0.98

3 9 1.7 4e+02 3.3 2.5 5 23 552 570 549 570 0.85

4 9 9.7e-08 2.3e-05 26.1 0.2 1 23 576 598 576 598 0.98

5 9 0.00077 0.18 13.9 0.9 1 23 608 630 608 630 0.98

6 9 7.3e-05 0.017 17.1 0.1 3 23 782 802 781 802 0.98

7 9 0.0009 0.21 13.7 4.2 1 23 808 830 808 830 0.97

8 9 4.2e-06 0.00098 21.0 3.0 1 23 934 956 934 956 0.96

9 9 6.6e-08 1.6e-05 26.7 0.7 1 23 962 984 962 984 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-06	0.00041	22.2	1.7	1	23	285	307	285	307	0.98
2	9	1.9e-06	0.00046	22.0	1.7	1	23	313	335	313	335	0.98
3	9	1.7	4e+02	3.3	2.5	5	23	552	570	549	570	0.85
4	9	9.7e-08	2.3e-05	26.1	0.2	1	23	576	598	576	598	0.98
5	9	0.00077	0.18	13.9	0.9	1	23	608	630	608	630	0.98
6	9	7.3e-05	0.017	17.1	0.1	3	23	782	802	781	802	0.98
7	9	0.0009	0.21	13.7	4.2	1	23	808	830	808	830	0.97
8	9	4.2e-06	0.00098	21.0	3.0	1	23	934	956	934	956	0.96
9	9	6.6e-08	1.6e-05	26.7	0.7	1	23	962	984	962	984	0.98

Sequence Information

Coding Sequence: ATGTGCTCGATTTTTCACAACCGAATTAATTACCGAGGTCCTAGGAGTGGGAACGGTGGTGGCGGTGGAGGTACTGGGAATGAGCCATCGTCCATCAAAGATGACCCAGATCGGAATAACAATAGCGGATGTGATGGTCCAGAGTCGGAACTTCATCTACACCAGAGCGATGATGAAGAATATGACGAAGGTGACAGCGTCGTTGAGGAGGCATTGGACTTATCTGTGATGTCACATTTGCCGGCAACCGGGCACGTTGCCCTTGAGGCACTGCAGCACACAAAGGTGGCTGTAGCTCAATTTGCTGCCACTGCCATAGCAAACTCGCAGAACTATGACGAAGCAGTGAGTGATTTGGCCGTAGTACAATCAACGATATTCAACGTACAGCGGCAGCAGCTCATGCAAATGCAGCTGATACAGCACCTGCAGTCACAGCTTAAACATCGTACAGAAGAGGAGTATGATGACGAGGATGATGACGTGCAGGAGGAGAAACTTACAATAAAAGAGGAAATTGATGGGGATGTACTCACACCTCGCCTGAGCACTGATCAAATCCCAGAGAAAGAAAAGACTGAAATGAAGGAGGAAGAAAAACCAAGCGGGGAACAAGAGTGCACTAAAGCATTCCAACCGCACCTGTGTGACATAAGTTCATCATTTGCTTCGAGCATTATCACTAATCACGACCCTCCACCGCCGCCCAATGAACCGAACTGTCTGGAGATGCTCCAACGACGGACCGAGGAGGTCCTTGACTCTGCGTCGCAAAGTGTGCACGCAAATCATTTGAATGATGAGTATGATTATTCTAGGAAGGATAGCCAAGGAAGGGGAGAGATCTTCAAGCATCGCTGCAAGTACTGTGGGAAAATATTTGGTTCCTATTCAGCTCTACAGATACACCTGCGATCACACACAGGCGAGAGGCCTTTTCAGTGCAATGTCTGTGGCAGTAAATTCACAACTAAGGGCAACTTGAAGGTACACTACCAGCGGCATACTCAAATATTTCCGCCAATGTTAATGCCACCTTCGACGAATGCCGAACAATATCCTCCGTATCATCATCCAGCTATGGTACCGCCAGTTTCTTCTGGAAATCCACCATTACGCCTGCCATTCCCCCCATTCGTTCAAATGCCTCCATTCCGCTTGAGTCCTCCTCCACCCATCCGTGAGGTAGAACCGCCGCCGCCGGTTGAGAAAAAACCACAAGTCCAACCGCAGACTGAGGCGCAAGATCTACGCAAATCTATCAGTGAAAATGACGAACGAATACGTCCTCTGATCGAGGAGAAACCAAAGAAAGAGATAGTCAAGCGGCCAGAAACTCCCGTTCCTCCACCATGTAATCGTCGAAAGCGAGCTTCCAGTCCTCGAGAGTCGCACCCTCCTCCACCTTCCAAGCCAGTTGATGAGAATGTTCCTGAGAATCTATCAAAAACTTCACGACGATCATCACTTAGCAGAGGTTCAGCTACCAGCCTCGAGCAAATTCCCTCCGAATACTCATTGGCCCAGATGGAACGACTTATCGATAAGTCTTGGGAGGACCTTATCGAGATTGATAAGACTTCGGAAACATCAAAACTACAACAACTCGTCGAtaatatagaaaacaagctTACCGATCCGAATCAGTGTATTTTCTGTCAGAAGGTGATGTCCTGTCGAAGTTCCCTGCAGATGCACATTCGCACACATACTGGCGAGAGGCCATTTCGGTGTCGCATCTGTGGACGGGCTTTTGCAACAAAGGGTAATCTGAAAGCCCACATGAGCATACACAAGATAAAACCTCCGATGCGTAGTCAATTCAAGTGCCCCGTGTGCCATCAGAAGTTCTCGAATGGGATTATTTTGCAGCAGCATATAAGAATACACACGTTAGACGATGGGGACGGTGATAGGGCGAAATACATTGAGATGTCAAATGCTGAGGATCAAAGCTCCACGAGATCGATATGCACTTCGGATAACATGGACTTTTCACAGTCCGAGTACTCTGGACAGAGGTCGGAATCATCGCAGGGTGACTTTGATGATTTTACCATGGCTAGCGAAGAAGAGTCTCCAACGGAGGCCAATTGCGATGAACGACGATATGAAAAGGAACGTCTTAATGAATCTGAAGGTGGCAGTAATTCCGATGGGAACGGTGCAATGGACTTGTCAACCAAAAGTGCAGACAGTGAGAGAAGCTCAGAGAATACTGGCGTTAGCTTAGTGCCCAATTTTCTACTAATGGCGCGAGACAATCGAAGTCCACCAAAGTTCCCTCTACTTCCATTCGGACCACTTGGAATTATTGCTGGTCTCCGTGGTGCCGCGAACATCTGTAACATTTGCTTTCGTATCTTTCCCAATGCATCCGAACTGGATCTTCACATTCGAACACATACCAAAGAGGATAACTACAAGTGCTCCATCTGTGATAAAGGCTGTGCCACAagaGAAGAATTCCATCATCATATTCTGGCTCACAGATTTCGTCGAGATTCTGGAGATTCTAGTAATAATCAAAATTCATCAAATTTTTCGAACGACGAAATACATTTAGAAGCGAATCATAGAATATTTAAAACTGAATCAACAGCAAATGATAGTCAAAAACCGTTATCCCCTACTGGAGGAGAATTATCATCGACAATGACCTCTGAAAATAATATTGGCGGCGATGCTGAACATTCCCTAATGAAGATGCAACTTCAATCAACACGCTTCACTCCGAATTCAGTGCTTAAGCAACAAGAGCTCCAACAAAACTCGCAAGAGCAACCAGCAAATAATAAACATTTCTGCACGGTATGCCGAAGAAATTTTAGTTCTAGCTCTGCATTACAGATCCATATGCGAACTCATACGGGAGATAAGCCATTTCAGTGCAATGTATGCCAGAAAGCCTTCACAACTAAGGGGAATCTGAAGGTTCATATGGGAACTCACATGTGGACAAATCCAGCTTCAAGACGTGGCCGACGCATGTCATTAGAGCTTCCAATGCATAGGCCTAATCTACCACCTTTGGGTTCACATCAAGACTCTGAGCTGTTATCGCGAAGGCCAGAAATATTCTTTCCATATTTACCACCATTTTTTAATGGTTTACAACCAAAGCCTGTGGATCTCCCACCAGGATCATTTCCAGGTCTTCCTCAACCTTCTTTCCCGAATGGCGCACCTTACAACTTCCCACCACTAGCCAGCTTAGATCGTCAAACTACCAAATCACCTGTGGATGAGAAGCACTCTAGTCCACACGAAAGTCCAACAAATGGACCCGCGAAACACTATCAACAGTTTAATAACCAGCAATCGCTTAAAGTGAAAAAGGACTTTCACCATGACGAGTTCGTCAAAGGATGA
Protein Sequence: MCSIFHNRINYRGPRSGNGGGGGGTGNEPSSIKDDPDRNNNSGCDGPESELHLHQSDDEEYDEGDSVVEEALDLSVMSHLPATGHVALEALQHTKVAVAQFAATAIANSQNYDEAVSDLAVVQSTIFNVQRQQLMQMQLIQHLQSQLKHRTEEEYDDEDDDVQEEKLTIKEEIDGDVLTPRLSTDQIPEKEKTEMKEEEKPSGEQECTKAFQPHLCDISSSFASSIITNHDPPPPPNEPNCLEMLQRRTEEVLDSASQSVHANHLNDEYDYSRKDSQGRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFQCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPSTNAEQYPPYHHPAMVPPVSSGNPPLRLPFPPFVQMPPFRLSPPPPIREVEPPPPVEKKPQVQPQTEAQDLRKSISENDERIRPLIEEKPKKEIVKRPETPVPPPCNRRKRASSPRESHPPPPSKPVDENVPENLSKTSRRSSLSRGSATSLEQIPSEYSLAQMERLIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCRICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTLDDGDGDRAKYIEMSNAEDQSSTRSICTSDNMDFSQSEYSGQRSESSQGDFDDFTMASEEESPTEANCDERRYEKERLNESEGGSNSDGNGAMDLSTKSADSERSSENTGVSLVPNFLLMARDNRSPPKFPLLPFGPLGIIAGLRGAANICNICFRIFPNASELDLHIRTHTKEDNYKCSICDKGCATREEFHHHILAHRFRRDSGDSSNNQNSSNFSNDEIHLEANHRIFKTESTANDSQKPLSPTGGELSSTMTSENNIGGDAEHSLMKMQLQSTRFTPNSVLKQQELQQNSQEQPANNKHFCTVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPASRRGRRMSLELPMHRPNLPPLGSHQDSELLSRRPEIFFPYLPPFFNGLQPKPVDLPPGSFPGLPQPSFPNGAPYNFPPLASLDRQTTKSPVDEKHSSPHESPTNGPAKHYQQFNNQQSLKVKKDFHHDEFVKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00389819;
90% Identity: -
80% Identity: -