Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: -
Assembly: GCA_949775065.1
Location: OX459112.1:3151487-3155604[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 8.1e-05 0.019 16.9 2.8 3 23 241 261 240 261 0.97

2 19 8.7e-07 0.0002 23.1 0.5 1 23 267 290 267 290 0.98

3 19 6.1 1.4e+03 1.6 2.9 1 15 333 347 333 355 0.74

4 19 0.00046 0.11 14.6 1.3 1 23 361 383 361 383 0.94

5 19 0.048 11 8.2 1.2 1 23 389 411 389 411 0.93

6 19 3.5e-06 0.00081 21.3 0.3 1 23 417 439 417 439 0.98

7 19 0.22 52 6.1 7.6 1 23 445 468 445 469 0.93

8 19 0.0058 1.4 11.1 1.1 1 23 483 507 483 507 0.97

9 19 0.38 88 5.4 0.2 2 21 518 537 517 538 0.89

10 19 0.0016 0.38 12.9 9.8 1 23 591 613 591 613 0.98

11 19 0.0051 1.2 11.3 0.2 2 23 626 647 625 647 0.96

12 19 0.19 44 6.4 2.5 1 23 652 674 652 674 0.97

13 19 2.3e-06 0.00054 21.8 1.7 1 23 681 704 681 704 0.97

14 19 0.019 4.5 9.5 0.3 1 23 710 732 710 732 0.97

15 19 0.014 3.3 9.9 6.1 2 23 739 760 738 760 0.97

16 19 0.015 3.5 9.8 6.4 1 23 812 834 812 834 0.97

17 19 9.1e-07 0.00021 23.1 3.0 1 23 840 862 840 862 0.98

18 19 2.7e-06 0.00063 21.6 2.0 1 23 868 890 868 890 0.98

19 19 0.0033 0.78 11.9 3.9 1 23 896 918 896 918 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	8.1e-05	0.019	16.9	2.8	3	23	241	261	240	261	0.97
2	19	8.7e-07	0.0002	23.1	0.5	1	23	267	290	267	290	0.98
3	19	6.1	1.4e+03	1.6	2.9	1	15	333	347	333	355	0.74
4	19	0.00046	0.11	14.6	1.3	1	23	361	383	361	383	0.94
5	19	0.048	11	8.2	1.2	1	23	389	411	389	411	0.93
6	19	3.5e-06	0.00081	21.3	0.3	1	23	417	439	417	439	0.98
7	19	0.22	52	6.1	7.6	1	23	445	468	445	469	0.93
8	19	0.0058	1.4	11.1	1.1	1	23	483	507	483	507	0.97
9	19	0.38	88	5.4	0.2	2	21	518	537	517	538	0.89
10	19	0.0016	0.38	12.9	9.8	1	23	591	613	591	613	0.98
11	19	0.0051	1.2	11.3	0.2	2	23	626	647	625	647	0.96
12	19	0.19	44	6.4	2.5	1	23	652	674	652	674	0.97
13	19	2.3e-06	0.00054	21.8	1.7	1	23	681	704	681	704	0.97
14	19	0.019	4.5	9.5	0.3	1	23	710	732	710	732	0.97
15	19	0.014	3.3	9.9	6.1	2	23	739	760	738	760	0.97
16	19	0.015	3.5	9.8	6.4	1	23	812	834	812	834	0.97
17	19	9.1e-07	0.00021	23.1	3.0	1	23	840	862	840	862	0.98
18	19	2.7e-06	0.00063	21.6	2.0	1	23	868	890	868	890	0.98
19	19	0.0033	0.78	11.9	3.9	1	23	896	918	896	918	0.98

Sequence Information

Coding Sequence: ATGGCGCTAGTAATCTGTCGCATCTGTGGCAGCAACGAAAATCTTAAACATGTGTTTAGAGAAGGCAACGATGAGCTTCTAGATCAGATCCGACTGTGTGCCAACATACAAATTGATGCCTTAGATTGCATGCCCAAATATGTTTGTTTTGATTGTGAAGAGGGATTGGCATTTTCCTATCGACTCCGAAAGCGCGGAGAAGAGACTGAAAAGAAACTTCGTCAAGAACTGCTTATTGAAACAAAGAATGAGCAATATTGCGATGGCGAAGAAAGTCTAGAAGATGTAAATGAAACTCTTATTGAAGAATCATGCGAAGATCAACTGTGGATGAAAGACGATGATTGTGTTCATTTCAATGAACACGAAGATTTCATTGAAAAAGTTGAATATGTGGACGAGGATATGCTGCAGGTTCTACCAGCAGAAGAGTATGATGAAAACCAACAGTGGATATCATCCTTAAGTGAAAATGGTGACATTGTTGAAGAAGAAGGCATTGAAAAAGTTGACGATTTTATAGAACTAATCTATGAAAACACTGAAACGAGTAGCGAATTGAAACAACCTGAAATACAGATAAAAGCGGAAGTTTCTACGTTAATGCAATATACGGCTGATTCTTTCCACAACCACACAAGAGACATGGCAGCAATTACAACTATCACCATCAATGCGGTCAGTAGTCTGGATAAAGAAATAGACCAATCAGTAAAGCACTGTGAGTTATGTCCAAAGACTTTTAAAACCGTTTCGCAACTAAACGTTCACAAGAAGTCGCATTCGAAGGAGAAATTATACACCTGTGAGATATGTGGCAAGAAAATGCGATATCAAGGTAATCTCCGAGTGCATATGCGAACTATACACAGCAAGATGACCGCTGCTGATCTTGAGAAATCCGCACAGCCACTCTACCACACTCAGTGTTTGGAATCAATGTCGGAAAATTGTAAATCAATAACAACAGTTTTCTTGCACGAGAAATGTAAATTGTTTAAATGCAGAGTCTGTGGTAAGATTTCAAACTTTAAGGCGACACACGTAGCGCACTGCAGAATTCACTTAAATGAGAAGCCTTTTCACTGTCAATTATGTGAGAAATCCTTTCGCCAACTCGCGACACTCAAGGAGCACGAGGTGATACATTCTGGAACGAGGCCATTCAAGTGCAGTCAGTGTAGTAGCAGTTTCCTACAGAAATCCGCTCTGGCAAAACATGAATTTTGGCATACTGGGCAGAAGCCTTTCGAATGCAGTCTATGTGGGACGAGTTTCAGAAATCGCGTCGCCTTGAAAATACACGAACGGATTCACACTGGTGAAAAACCATATTCTTGTGAAATTTGTTCAAGCAAGTTTCGTGAAAAACGTCAGCTAATAAGACATAAGCACCTGTGTCACCACAGTCAAACGGAAAAGATAATCAACCACAAGTCAGCGTACTACCATTGCACAtggataaattgtaaaaagaaaTTTGTGTTGCGTTTGAATCTGGTCGCTCATTTGAGGGGGCATCTTAACCCAGTAGATGCTGCGGATGTGTTGAAATGTGGAGATTGTCAGAAGGAATTTCTCAAACCAATTTACATGTGGCAACATCAAAAAATGTACAAGGGCACTTGCGCCTGGCGAACGAAACTGAAGGAGCACACTGTGGTTAAAAGAATTCCAATTAAGTATGCGCTTTGTTCGACCTGCTGCAAGCTATTTGTCAGCCATGTTGCATTAGCAAGACATCGTCGTTGTCATCTTAGCCTGCGTGAGCACAAGTGTAGCAAGTGCCATATAAGATTTCGGCATCGTTACAGCTTGGATTTACACATGAGAAAACATATTTTGGCTAACCAAAAGCCGAAGAAAATGCAAATCGAATGCGAGACTTGCGCTGAGGTATTCGAAACGAGATCAAAATACTTTGAGCATATAAAGGATCATGGAGACAAACGATTCCACTGTGTGGTCTGTGACAAATGGTTTAATGTTAGATACCGTTTCGAACAGCACATAAAGAATCATTCCAGTGAAAAGGCGGCTTTTTCCTGTCCAACATGTAACAAAAGCTACACAATCCAACACAACTTAGTGCGTCACATTCGTTCGGTGCATAATTACGAAAAACGATTCCAGTGCTTGAAGTGCAAAGCTAGTTTTGGCAGAGCAGATATATTGAAAATGCACTTGGCCAAACACTCGAACGAAAGAAACGTCGAGTGTGAAGTCTGCCAAAGGAAATTTAAAACTACTCAGCACCTGCACTACCATAAAAAAAGTCATGTGAAGAAATCTGAACGACCCAAGAAGGCTGTACGGCTAGGACCTAAGCCAAAAGTTAAGGTACAAGCCTACCTTTGTGAATTCTGCAACAAGATCTCACATCATAGAACAACGCATTTGAATCATTTAAGAACGCACACTGGTGAGAAACCATTCAAATGTTGTTTCTGTGATAAGGCTTTTCGAACGAGTCACGCGAGAAGTAATCACCAGCTGCTGCATACAGATCAGCGTCCTCACAAGTGTAACCTCTGTGGCATCTCATTTCGGCAGTCGGCTCATCTTAAGTCACACATGCTTATTCACAGCGGAGTTAAGCGACATGTATGTGATTTTTGTCAGAAGGCTTTCACGATGAAAAGCAACCTGATGGTGCACTTAAGAATGCACACGGGCGAGATGCCCTATAAGTGTAATAAGTGTCCGCAAAAATTCTTTAAGCTTAACCAAGTCAAGCGACACAAGATGAGCCATGTGAGTGAGGATGATGAACGAGCGGAGACCTGCGATGGGGATCGTAACGAGATGGTAGGTGACTTCAATGTTTCACAAATGAGTTTGTACATTGATGACATCATTGAAATAAACCAAGACGCTGGCGATAGTATTGTTATGTCCGATTGTATAGTTGAAGAATGTTGA
Protein Sequence: MALVICRICGSNENLKHVFREGNDELLDQIRLCANIQIDALDCMPKYVCFDCEEGLAFSYRLRKRGEETEKKLRQELLIETKNEQYCDGEESLEDVNETLIEESCEDQLWMKDDDCVHFNEHEDFIEKVEYVDEDMLQVLPAEEYDENQQWISSLSENGDIVEEEGIEKVDDFIELIYENTETSSELKQPEIQIKAEVSTLMQYTADSFHNHTRDMAAITTITINAVSSLDKEIDQSVKHCELCPKTFKTVSQLNVHKKSHSKEKLYTCEICGKKMRYQGNLRVHMRTIHSKMTAADLEKSAQPLYHTQCLESMSENCKSITTVFLHEKCKLFKCRVCGKISNFKATHVAHCRIHLNEKPFHCQLCEKSFRQLATLKEHEVIHSGTRPFKCSQCSSSFLQKSALAKHEFWHTGQKPFECSLCGTSFRNRVALKIHERIHTGEKPYSCEICSSKFREKRQLIRHKHLCHHSQTEKIINHKSAYYHCTWINCKKKFVLRLNLVAHLRGHLNPVDAADVLKCGDCQKEFLKPIYMWQHQKMYKGTCAWRTKLKEHTVVKRIPIKYALCSTCCKLFVSHVALARHRRCHLSLREHKCSKCHIRFRHRYSLDLHMRKHILANQKPKKMQIECETCAEVFETRSKYFEHIKDHGDKRFHCVVCDKWFNVRYRFEQHIKNHSSEKAAFSCPTCNKSYTIQHNLVRHIRSVHNYEKRFQCLKCKASFGRADILKMHLAKHSNERNVECEVCQRKFKTTQHLHYHKKSHVKKSERPKKAVRLGPKPKVKVQAYLCEFCNKISHHRTTHLNHLRTHTGEKPFKCCFCDKAFRTSHARSNHQLLHTDQRPHKCNLCGISFRQSAHLKSHMLIHSGVKRHVCDFCQKAFTMKSNLMVHLRMHTGEMPYKCNKCPQKFFKLNQVKRHKMSHVSEDDERAETCDGDRNEMVGDFNVSQMSLYIDDIIEINQDAGDSIVMSDCIVEEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -