Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: -
Assembly: GCA_949775065.1
Location: OX459114.1:24779975-24783650[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.44 1e+02 5.2 0.1 1 20 83 102 83 104 0.91

2 14 0.6 1.4e+02 4.8 0.3 1 23 166 188 166 188 0.92

3 14 0.00024 0.057 15.4 1.7 1 23 198 221 198 221 0.97

4 14 2.7e-05 0.0062 18.5 0.4 2 21 228 247 227 248 0.93

5 14 0.0015 0.34 13.0 0.9 1 23 287 309 287 309 0.98

6 14 0.006 1.4 11.1 0.3 2 23 314 335 313 335 0.97

7 14 0.00022 0.051 15.6 0.3 1 23 341 363 341 363 0.98

8 14 2.2 5.2e+02 3.0 0.8 1 23 369 391 369 391 0.95

9 14 0.072 17 7.7 1.6 1 23 578 603 578 603 0.92

10 14 8e-06 0.0019 20.1 0.2 1 23 610 632 610 632 0.99

11 14 1.3e-06 0.0003 22.6 0.3 1 23 637 659 637 659 0.99

12 14 2.6e-08 6e-06 28.0 2.6 1 23 665 687 665 687 0.98

13 14 0.088 21 7.4 3.6 1 21 693 713 693 715 0.96

14 14 0.00046 0.11 14.6 0.6 2 20 722 740 721 742 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.44	1e+02	5.2	0.1	1	20	83	102	83	104	0.91
2	14	0.6	1.4e+02	4.8	0.3	1	23	166	188	166	188	0.92
3	14	0.00024	0.057	15.4	1.7	1	23	198	221	198	221	0.97
4	14	2.7e-05	0.0062	18.5	0.4	2	21	228	247	227	248	0.93
5	14	0.0015	0.34	13.0	0.9	1	23	287	309	287	309	0.98
6	14	0.006	1.4	11.1	0.3	2	23	314	335	313	335	0.97
7	14	0.00022	0.051	15.6	0.3	1	23	341	363	341	363	0.98
8	14	2.2	5.2e+02	3.0	0.8	1	23	369	391	369	391	0.95
9	14	0.072	17	7.7	1.6	1	23	578	603	578	603	0.92
10	14	8e-06	0.0019	20.1	0.2	1	23	610	632	610	632	0.99
11	14	1.3e-06	0.0003	22.6	0.3	1	23	637	659	637	659	0.99
12	14	2.6e-08	6e-06	28.0	2.6	1	23	665	687	665	687	0.98
13	14	0.088	21	7.4	3.6	1	21	693	713	693	715	0.96
14	14	0.00046	0.11	14.6	0.6	2	20	722	740	721	742	0.95

Sequence Information

Coding Sequence: ATGgataaaaacataaattttctAGAATCCCTGGCCGAATTTAGTGGAAGTAGATCTGATCGAATCTCCAAAACTGAAGAGGTATTCACAAAAATATGCCGCACATGCCTCACTGAAACAAACGACAACACACTGGACAGCATCGTCTTTCTTACGAACAATTCCCAGGGAATTTCTGTAACGCTTAAAGAAATGATGGAAGCATGTACCGGATTgcagTTTAATACAGAGGACAAGTTACCTCGTCATATCTGTAATGGGTGTCTGAAAGCTATAGAATCTGCATATTTGTTGCGTATACATAGCCAGCGAATCGATATGATACTAAGAGGATTTTTGGAACAACTGCACACCATGAAAGACGAGACAGGCGGTGAAACTGAATCCAGTCTCCCAGTTCCCATTAAATCTGAAGAAATCGATGAACCGACAGACGCCATACAATTCGATGATTATCAAGTGACATATATTAAAGAACCATATGCAAATTCTAGTTTTAAATGCGATCCGTGCAATAtgAGTTTTCTGAATGAAATGGATTTGGAAAAACACAAAGTTGAGCATGGCCCAGCGGCTAGGAAAAAGAAGCTCTTCAAATGTGGCATTTGTTCAAAGAAGTACGCCTTTCGTAGTGGACTACATAATCATCTGATGGTATCCCACGTAAATAAGAAAGACATCCAATGTTCGATATGTGGTAAAAAGTTTAAGAGGATGCAAGGTTTGCGAAGACATAAAAACGTAATTTGCGTCGCTCCAGAAACTATAACCAAAGTGGTTGAATCAGCTTCAGAAGTTAAAGTTCACAGTCCTGGTGACTCGACGGATGCGGACAATAtaaaagttgaaattaaaaacttctCATGTTCTTTGTGTGGCGGGAAATTCAAACTAGAAAATGACTTTCGCAATCACATGCAGCTTCACTCAACCGAAAAACGATGCCCCTACTGTAAAAGATTATTTGATCGACCGATTATATTAGAAAGTCATATCCGATTGCACACCGGTGAAAAACCTTTCGTTTGTCCAATGTGTTTGACTGCATTCAGTGCTGCTAGGTCCTTAAGAAAACATGTCAAAAAGCATGCAGAGAAAACGGAATACCCTTGTAATAATTGTGCGAATAAGTATTTATCAGAAAGAGAACTCTCAAGGCATTCAAAGTCCCACGAACAAGAAGAAGCTACTGACGTATCCAAACTAGAAAAGGCGCTTAGCCTTGCAGAGAACATATCGCTAAAGTTGAATAGTTGCAAGGACATAGTTTTTGAGGAGCAAACTGATATAAGTGAGTCAGACCCAATCAAAGAGGCCGATATTCCTTCCACATCTAATTCCAATAATGAATGGATGAATATTCAAGAATATAAAATAACACCTGCAGATATGAGTAACAATTTATCGACCAGCACTTCTGTAAGCCAGTTGGTTTGTAAGACAGAACCTGATGCAGAAGAGTACCCAGCTTCCGATAAAAGCATTGAACCAACTGTTGGATTTGAAATAACTGTTAAACAAGAAACATCGGAAGATAGTTACACAACTTTAACACTCGACGATAAAAAAGTCAATGGCGCTGAGCCTACAGTTGATCATTTAAAAACAGACACTCTGCAAGCACATTCAGGAGACGCCTCTTTAACACTTCGTATTATCAATGAACCAATCAGTGACGTTGAACGAACATTACAACACCAATATATAATAGATGACACAATTTATGGGAGGTTTACATGTGTAGTCCCAATGTGCAAAATAGAGTTCAAATACTGCCGAGACCTCATCAACCACTACACAAGTCAGCATTGTATGGGACCACCGCCGTTCAAGTGTCCCGTATGCGGGaatatatttcctttaaaaatagATTTACGAAGGCatttgaaaacgcatttaacGTGTGAATACAAATGCCCTTTTTGCCCCAAGGCGTACTCGCAAATTGTGGACTTAAATACTCACTTACGTACGCACACCGGTGAACGACCATTTAGCTGTCCAAAATGTAATAAAAGTTTTAAGCAACGTTCTACTTTACGGGTTCACATTAAGACTCACAGCATTGTCAAAGAATATAAATGCAATATTTGCGCGAAAGAATATTTTTCATACAACGGGCTGTTTTTGCACATGAAATGCCACATCGAGATTAAGGAGCTACAATGTAAGTTCTGCAGCAAACAGTTTCCATCAAAAAGTCGCTTGATTCGCCATCAGGATGGCATTTGCAGCACTCGTGCATCGACttaa
Protein Sequence: MDKNINFLESLAEFSGSRSDRISKTEEVFTKICRTCLTETNDNTLDSIVFLTNNSQGISVTLKEMMEACTGLQFNTEDKLPRHICNGCLKAIESAYLLRIHSQRIDMILRGFLEQLHTMKDETGGETESSLPVPIKSEEIDEPTDAIQFDDYQVTYIKEPYANSSFKCDPCNMSFLNEMDLEKHKVEHGPAARKKKLFKCGICSKKYAFRSGLHNHLMVSHVNKKDIQCSICGKKFKRMQGLRRHKNVICVAPETITKVVESASEVKVHSPGDSTDADNIKVEIKNFSCSLCGGKFKLENDFRNHMQLHSTEKRCPYCKRLFDRPIILESHIRLHTGEKPFVCPMCLTAFSAARSLRKHVKKHAEKTEYPCNNCANKYLSERELSRHSKSHEQEEATDVSKLEKALSLAENISLKLNSCKDIVFEEQTDISESDPIKEADIPSTSNSNNEWMNIQEYKITPADMSNNLSTSTSVSQLVCKTEPDAEEYPASDKSIEPTVGFEITVKQETSEDSYTTLTLDDKKVNGAEPTVDHLKTDTLQAHSGDASLTLRIINEPISDVERTLQHQYIIDDTIYGRFTCVVPMCKIEFKYCRDLINHYTSQHCMGPPPFKCPVCGNIFPLKIDLRRHLKTHLTCEYKCPFCPKAYSQIVDLNTHLRTHTGERPFSCPKCNKSFKQRSTLRVHIKTHSIVKEYKCNICAKEYFSYNGLFLHMKCHIEIKELQCKFCSKQFPSKSRLIRHQDGICSTRAST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -