Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: -
Assembly: GCA_949775065.1
Location: OX459115.1:3054038-3056095[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.3 1.9e+03 1.2 0.2 2 10 7 15 6 19 0.82

2 14 0.18 42 6.4 0.5 1 23 181 206 181 206 0.91

3 14 9.4e-05 0.022 16.7 0.3 1 23 212 234 212 234 0.98

4 14 2.7 6.3e+02 2.7 0.2 3 10 241 248 239 250 0.84

5 14 0.088 21 7.4 0.4 2 12 269 279 269 292 0.81

6 14 0.00011 0.025 16.6 4.9 1 23 298 320 298 320 0.98

7 14 5.4e-07 0.00013 23.8 0.5 1 23 326 348 326 348 0.96

8 14 4.2e-06 0.00098 21.0 2.2 2 23 354 375 353 375 0.97

9 14 0.00081 0.19 13.8 2.9 2 23 383 405 383 405 0.93

10 14 2.8e-05 0.0067 18.4 1.2 1 23 430 452 430 452 0.99

11 14 2.4e-05 0.0057 18.6 2.7 1 23 458 481 458 481 0.97

12 14 5e-06 0.0012 20.8 1.6 1 23 487 510 487 510 0.93

13 14 4.9e-05 0.011 17.6 0.3 1 23 516 538 516 538 0.98

14 14 6.5e-05 0.015 17.2 0.7 1 23 544 566 544 566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.3	1.9e+03	1.2	0.2	2	10	7	15	6	19	0.82
2	14	0.18	42	6.4	0.5	1	23	181	206	181	206	0.91
3	14	9.4e-05	0.022	16.7	0.3	1	23	212	234	212	234	0.98
4	14	2.7	6.3e+02	2.7	0.2	3	10	241	248	239	250	0.84
5	14	0.088	21	7.4	0.4	2	12	269	279	269	292	0.81
6	14	0.00011	0.025	16.6	4.9	1	23	298	320	298	320	0.98
7	14	5.4e-07	0.00013	23.8	0.5	1	23	326	348	326	348	0.96
8	14	4.2e-06	0.00098	21.0	2.2	2	23	354	375	353	375	0.97
9	14	0.00081	0.19	13.8	2.9	2	23	383	405	383	405	0.93
10	14	2.8e-05	0.0067	18.4	1.2	1	23	430	452	430	452	0.99
11	14	2.4e-05	0.0057	18.6	2.7	1	23	458	481	458	481	0.97
12	14	5e-06	0.0012	20.8	1.6	1	23	487	510	487	510	0.93
13	14	4.9e-05	0.011	17.6	0.3	1	23	516	538	516	538	0.98
14	14	6.5e-05	0.015	17.2	0.7	1	23	544	566	544	566	0.98

Sequence Information

Coding Sequence: atgagtGCCGTGGAAAGTACCTGCCGGACATGTGGAAAAATGTCTGAGCAGGAAGATGGCTCAGATCTCTACCCAATGTACACTTCAACAGAGTACTgcaatgaattaaaaatgattcTTGGGGAATTCGAAATATGGAATCTAAATATCTCTCAAGCGGACGGCCTACCTCAAAAGATTTGCCTAACTTGTTTTGATAGTTTCTGTCAAATACACAACTTCCGCATGATATGTCAGGAGGCTCAAATGAATTTCGGGGAGCTGTGCACTGGTCTGGATATCATAATAAAACTTGAACCTGAGTTTAGCGGAATAGATGTGGACTTTCCGGAGGATTTTGAGGGTGAACAAACAATTACTGTCCAGGAGCACTATCAGTTTCCTGGTGACGATCGTTCAAAACTAACAGATCCTCTCCTAGAAGAAAGAACATGTGCAAAGCTCTTGGAAACTGTCAACTCCGACGAGGAGGACCGCAAAGAGAGAGATCGCCGTGACGCGCTTGAGGAAATGAATGCAGTAATTCCCGAGTTCAAACCGTATCAATGTGAATATTGCATGGATGTTGTGAGTTTTGACGATCCAGAGCTGCTAAATCAGCACTACAATGTCTTTCACTCTTCGGATACCCCCTTCCCGTGTCCTAAGTGTGAGAAGGCCTTTGACACGAAAGGAAAACGAAATAGCCATGCTAGAGTCCACTACCGTATTATACTTGACTGTGAAATTTGTGGTAAAAAAGTAAGAGGCGGCAAGCGAATGATGGCTCAGCATAATGAATTGCACCACATTGAAAAAGCCCGCGAGTGTACAACGTGCGGCAAGAAGTTCAATAACATAACGTTAAAGAGGTTCAATTATCACATGAGTTGGCATGATGATACCAAGCTGCACAAGTGCAAGTATTGCGAAAAGAAGTTTATCCAGATTACCCATTTGGTTGTGCACGAGAGGACGCACACAGGAGAGAGTCCTTTCCTTTGCAATGAGTGTGGGACTGGATTTAAAAACTCTGGTCTCCTACAAAACCATATGAAAATGCACGGGTTGCGAGAGTTGGAATGTCCGAACTGTCCCAAAAaattctACCATCAGCATGGCTTACGGATTCACATGCAGATCCACGATCCGAATAGGAAAATTCCACGCTGCGAAATTTGTGACAAGCCCTTTCGCTCCACAATGAATCTGCGCTTGCACAATCATAAGAGACACGGTGCCCCAGCCTCAGTTGCAATACAGAATATTCTGAATAAACGGGAAATGAAACCACAGTTCATAAAACCATATAAATGTGGAAAGTGTCCAGAATCATTTGTGTTGCATACGCAACTGATAAAACATTTGAAAATTCATGACGAGAACAGACCGTTTTCCTGTGAACGGTGCAGCAAATCATTCAAGCGGGAAGCTCATTTGAAATTGCATGTAAATTCGcttcatttaaaaaagaagCCACATAAGTGCTCAATTTGCGGATGGGCCTTTTCCCAAAGAACCAATTTAAAAGAACACTTTGCTTCTAAACATGAGGATAAGAGAGATTTCAAATGTGATGTCTGTGGAAAGGGGTTTGCCATTGCCAAGACGCTTAAAATTCATAAGCTCAAGCACATAGATAAGAAACCATTTACCTGCACCATATGCAACAAGAGCTTTAAACTGATGGGTGTCCTTAAATtGCACATAAACTCTCATCTAAGGAAGAACGAAGTTGATGTCGCTGGAGGCGATATTACGGATATTGTTGTTTAG
Protein Sequence: MSAVESTCRTCGKMSEQEDGSDLYPMYTSTEYCNELKMILGEFEIWNLNISQADGLPQKICLTCFDSFCQIHNFRMICQEAQMNFGELCTGLDIIIKLEPEFSGIDVDFPEDFEGEQTITVQEHYQFPGDDRSKLTDPLLEERTCAKLLETVNSDEEDRKERDRRDALEEMNAVIPEFKPYQCEYCMDVVSFDDPELLNQHYNVFHSSDTPFPCPKCEKAFDTKGKRNSHARVHYRIILDCEICGKKVRGGKRMMAQHNELHHIEKARECTTCGKKFNNITLKRFNYHMSWHDDTKLHKCKYCEKKFIQITHLVVHERTHTGESPFLCNECGTGFKNSGLLQNHMKMHGLRELECPNCPKKFYHQHGLRIHMQIHDPNRKIPRCEICDKPFRSTMNLRLHNHKRHGAPASVAIQNILNKREMKPQFIKPYKCGKCPESFVLHTQLIKHLKIHDENRPFSCERCSKSFKREAHLKLHVNSLHLKKKPHKCSICGWAFSQRTNLKEHFASKHEDKRDFKCDVCGKGFAIAKTLKIHKLKHIDKKPFTCTICNKSFKLMGVLKLHINSHLRKNEVDVAGGDITDIVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542393;
90% Identity: iTF_00241006;
80% Identity: -