Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: -
Assembly: GCA_949775065.1
Location: OX459113.1:8012279-8014648[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00013 0.031 16.3 5.0 2 23 227 249 226 249 0.96

2 11 4.3e-05 0.01 17.8 3.2 1 23 283 305 283 305 0.99

3 11 7.6e-08 1.8e-05 26.5 0.9 1 23 311 333 311 333 0.97

4 11 4.3e-07 0.0001 24.1 1.6 1 23 339 361 339 361 0.98

5 11 5.1e-05 0.012 17.6 1.6 1 23 367 389 367 389 0.98

6 11 0.00018 0.041 15.9 1.2 1 23 395 418 395 418 0.97

7 11 2.1e-06 0.0005 21.9 1.0 1 23 430 452 430 452 0.99

8 11 0.00032 0.076 15.1 0.1 1 23 459 482 459 482 0.92

9 11 8e-08 1.9e-05 26.4 1.5 1 23 488 510 488 510 0.98

10 11 0.00037 0.086 14.9 0.9 2 23 517 538 516 538 0.95

11 11 6.3e-05 0.015 17.3 0.6 1 23 544 566 544 566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00013	0.031	16.3	5.0	2	23	227	249	226	249	0.96
2	11	4.3e-05	0.01	17.8	3.2	1	23	283	305	283	305	0.99
3	11	7.6e-08	1.8e-05	26.5	0.9	1	23	311	333	311	333	0.97
4	11	4.3e-07	0.0001	24.1	1.6	1	23	339	361	339	361	0.98
5	11	5.1e-05	0.012	17.6	1.6	1	23	367	389	367	389	0.98
6	11	0.00018	0.041	15.9	1.2	1	23	395	418	395	418	0.97
7	11	2.1e-06	0.0005	21.9	1.0	1	23	430	452	430	452	0.99
8	11	0.00032	0.076	15.1	0.1	1	23	459	482	459	482	0.92
9	11	8e-08	1.9e-05	26.4	1.5	1	23	488	510	488	510	0.98
10	11	0.00037	0.086	14.9	0.9	2	23	517	538	516	538	0.95
11	11	6.3e-05	0.015	17.3	0.6	1	23	544	566	544	566	0.98

Sequence Information

Coding Sequence: ATGTCGCATAACATTAGCTTGGAACAAATCTCCTTTTTAGAGAAAACATGCCGAGCCTGCTGTCGATACGACCCAAACGATTCCATAACACTGCACCCGATTTTCAATGGTGGCAATGGCAATACGGATGAGCTCAGTACGGAAGTAGCACGCGTGTACAAAGAATTTATTCTTTGGGATTTAGAgATTAAATCAAACGATGGCTTACCACAACAAATTTGTAATGATTGCTTGGAAAGACTTACCCAAGTGCAACTTTTTCGTAAGGAAATTCAAGAGTCTCAACGATTGCTCTCCTCATACCTTAATGGTGGTAAAATTGATGCTGAAAATGGCAGCGCGACAATTACGATTGAAACCCTTCCAATGTCGACGGATGGTATCGACCGTTTGGGATATGTTTCACCTAGTAAATTAATTGAATATGTTGGTTCGGAAGAGGAGGATGAGGATGTcactttaaagaaaaatatacacGAGATcgattattttgaagaaaacgaAAGTGATTATCTTTTCAACCATCCCAATCAGATTGAAGCAAGTGATTTGCAGGAATTCAAGGCAGACAATCCGGAACCGATTGAATTTAAAGCCAGTTGCAataaaaaatttgaagaaaCTACTATTGATAAGGAGTGTAGGGTGGAAGAGCCACCATCCGATAGTGGTAACACAAAATGTGATATATGTTTGAAAAGCTTTCGTTCTGCACACCATTTGGTGCGGCACAAGCGCTTGTTTCACATTCGAAGAGATTTTACCTGTGCAATATGTGGTAGCAAATTTGAGAAAATCACACAAAGGAGTTTTGATTACCATTTGAGATCTCATCATGCCAAAAAGTACAAGTGCGCATACTGTGAGAAGAGCTTTCAGCAGAAGATTCATATGATCAATCATGAGAGGACACACACCAAGGAGAAACCGTTCGCTTGTAACATTTGTGGAAAAAAGTTCCGCCAACAGACCAGCCTACAGGAGCACTTGATGACACACAAAGATTCTCATCCCTTTAAATGTGAAATTTGTGGAAAAGgTTTTACACATCGTTCCGGTGTTCGTATGCACATGCGCCTGCATGCTGATGACAAGCAATACCAATGTGATGTTTGCGGTGCAAGTTTTCATCAAAAAGCCCATTTGGATCTCCACTTAATGAACCACACCGGTGAAAAACCGTTCCAGTGTGAATTCTGCACAGTAGCTTTCCGGCAGGCCTACCAATTGGGAAACCACATGCACTCGGTGCACTTCGACAGCTCAGATAGTATTCGAAACGGTGACTACCAGTGTTCACAATGCGATAGGGAATTTACCAATGCAATGGATCTTATTCGACACAAGAAATCCCATGACAATGGCGAACGTAAGTTCATGTGCCCAAAATGTGGCGCCGGATTTAAGATGGAAATCCACTTGAATGCCCACATTGATGCGGTACATTTGAAGAAGAAGCCCTACAATTGTACATACTGCAATAAATCCTTTGCACAGTTGTCCAATTTGAATCAGCATCTAAAGATTCATAGAGGTGGCAAGCAACTTAAATGCAGTTTCTGTGATAAATCATTCACCCTAAAAAAGACTTTACTAATGCACGAGGCGATTCATTCCGGCGAGAAGCGTTTCAAGTGCAATTTCTGTGATGAATCGTTTGTGTATCGACAGACACTTGGAGCTCATATAATGAACCATTTCCGTGATGAAAACGAGGAAGAGTACACAATAAACGAAGAAATCCTAAGTGACGAAGATTTCCTGGGTTACGGCGAAGACTTGGATCTCAATGATGAGTTTAAACTTGACACATATAACTTACTAATGGATGAGAATTGA
Protein Sequence: MSHNISLEQISFLEKTCRACCRYDPNDSITLHPIFNGGNGNTDELSTEVARVYKEFILWDLEIKSNDGLPQQICNDCLERLTQVQLFRKEIQESQRLLSSYLNGGKIDAENGSATITIETLPMSTDGIDRLGYVSPSKLIEYVGSEEEDEDVTLKKNIHEIDYFEENESDYLFNHPNQIEASDLQEFKADNPEPIEFKASCNKKFEETTIDKECRVEEPPSDSGNTKCDICLKSFRSAHHLVRHKRLFHIRRDFTCAICGSKFEKITQRSFDYHLRSHHAKKYKCAYCEKSFQQKIHMINHERTHTKEKPFACNICGKKFRQQTSLQEHLMTHKDSHPFKCEICGKGFTHRSGVRMHMRLHADDKQYQCDVCGASFHQKAHLDLHLMNHTGEKPFQCEFCTVAFRQAYQLGNHMHSVHFDSSDSIRNGDYQCSQCDREFTNAMDLIRHKKSHDNGERKFMCPKCGAGFKMEIHLNAHIDAVHLKKKPYNCTYCNKSFAQLSNLNQHLKIHRGGKQLKCSFCDKSFTLKKTLLMHEAIHSGEKRFKCNFCDESFVYRQTLGAHIMNHFRDENEEEYTINEEILSDEDFLGYGEDLDLNDEFKLDTYNLLMDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -