Bscu041026.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459115.1:23579390-23596875[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.58 1.4e+02 4.8 2.3 3 23 271 292 269 292 0.94 2 21 1.6 3.6e+02 3.5 0.7 6 23 301 318 301 318 0.96 3 21 0.00016 0.037 16.1 0.6 1 23 324 346 324 346 0.99 4 21 2e-06 0.00047 22.0 2.1 1 23 354 376 354 376 0.99 5 21 7.7e-05 0.018 17.0 1.7 1 23 382 405 382 405 0.95 6 21 0.0024 0.55 12.3 0.3 3 23 413 433 412 433 0.97 7 21 6.9e-05 0.016 17.2 0.5 2 23 442 464 441 464 0.96 8 21 0.0017 0.39 12.8 0.1 1 23 471 494 471 494 0.93 9 21 0.058 13 8.0 0.1 1 17 500 516 500 516 0.90 10 21 0.16 37 6.6 0.3 2 23 628 650 627 650 0.92 11 21 0.11 26 7.1 0.3 6 23 659 677 659 677 0.92 12 21 0.0044 1 11.5 0.1 1 23 681 703 681 703 0.96 13 21 5.4 1.3e+03 1.8 0.1 2 23 908 930 907 931 0.91 14 21 0.092 22 7.3 0.0 6 23 939 956 939 956 0.98 15 21 6.6e-05 0.015 17.2 1.0 1 23 962 984 962 984 0.98 16 21 4.8e-05 0.011 17.7 2.8 1 23 990 1012 990 1012 0.98 17 21 0.00049 0.12 14.5 0.4 1 23 1018 1041 1018 1041 0.93 18 21 0.00075 0.17 13.9 0.2 3 23 1049 1069 1048 1069 0.96 19 21 0.00012 0.028 16.4 0.5 2 23 1078 1100 1077 1100 0.97 20 21 0.077 18 7.6 0.4 1 23 1107 1130 1107 1130 0.93 21 21 0.0026 0.61 12.2 0.1 1 17 1136 1152 1136 1153 0.89
Sequence Information
- Coding Sequence
- ATGCTGTGCATATTATGCCTGAATGCCTCGGATCGAatcttgaatgccaccaATGTTAGTAGTTTAATAATCAAGCATTTCTGGCTCCAGCCTAACAAAGAAGATGCTAACGCCAATGTTATTTGTTGTTCATGTTGGGATGCATTGGATTCCTTTCATAAGTTCTACGAAATGGTGGAGGTCGCATACCTTAAATTACTTAGCACTGTAACTGCCACCGATGAGGACCTAAAAAGAGAAGACCAATCTGATTGCGATAACTTCGATCCTTGCATTAGCCTATTATCAGCAGATGTTAAACTGGAAGTTAATGAACACTGCATTGTGACTTCGCTGAAACTAGATCCGATCCCAGATACAGAAACGAGAATAAACTCCTTAGAAGCTCTTGCCATTAAGAAGCACAAAGGTGAAGTAGAATCTGACTCTGATTCAGAAATTCCCCTGGCGATGTTAGCTAAGCAGAGAAAATCACCCAATCAAGTGGTTTCAACAGGTGACAGTTCAATAGACCACTACGAACGAAGATTAAGTCCATTAGTGGATGATTCTTATGACAATGATGATGACACTGACTCAgaaattcataagaaaaaaGTGAAAGACACTGCTAGCGATAAAAATGGTTACAACGCAGTAAAATCGAAAGCATGTTCGAGAAAAGCGAGACGAGCTAAAGAGCGAAAGAAACCCCAACGAAAAGTGAAATCTCCTGACAATGAAACCCGAGTAAAACGAAAGATAATGGATCCAAGAAAGAAGCTGTCTCATGAATTCGAGGAAGTTATCAAAAAAAACATGAAGCTGTTCTGCAGCATCTGCCATGTGCCATTAGCTAATTTTTTCCTGCTTAGAAAACACTATCATTCTGTTCACAATGAGCGCGGTTATGCTACGTGTTGTGGAAGGAAATTTCGGAAACGTTGTGTTCTCGTGGatcatatttatttacatttaaatcCAGAGTACTTCAAGTGTGACAAATGCGATAGAAATATGGCAGATAGAAGGAGCTTAGAGGTTCATATGAACACACATGACACTAGCAAGCAGCGCATCTATCAATGCGATGAGTGCAGCAAGAGTTTCTATCGGAAACTGCTTCTGGAACgtcatatgtacacacatattcCCGATCGAAAGTTCAACTGCTCGGATTGCCAAAAGTTGTTCTCATCTAAATATACCTTGCGACAACACGTCAACAATGTCCACAACTCGGCGTATATGAAAATTTGCGAGCAATGTGGCAAATCGATAAGGGGCCTGGAGGCATTCCGTCGTCATCAATTGAAGCATACTGGTATGCCAATACCATTGGTTCAGTGTGAGAAATGCGGTGTTAAACTTACAAACAAATACGGTCTCAAGCGCCACATAAACTCCATGCATCCTGACACTAAAGTCTTACATGTTTGCAAAGTCTGCGGTAAAATAGCACCAAGTGCGGCGGCACTGCAACGGCATACTTCATATATGCACAAATGTGAAAGGAATCACAAGTGCCCAATGTGTGCTAAGGCGTTCAAAAAACCTGGCGGACTTAGGCCAAGCGCTGAGAATGCCAACGACAAAGTTATCTGTGGCTCCTGTTGGAGTGAATTGCATTCTTTCCACAAGTTCTATCAAAAGGTTGAGGAAGCCCATTCGAAATTGATTAGTTCTTGGTCAGCGGCGACTACGGATATTTTATCAGCCGCCATTCGTATTGCAGGTATCAAATCTGAGGTGGGTGAGGAGTCAGATGAAATGGAAACTCCTTCGTCCAGCGATGATGAAAGTGACTACGAAGAGACAAGTTACAAGGCCAACGGTGAACTAATCACAAGGGTAACACCATCGATGGAGTTAGATGATGTTATCAAACAACACATCAAATTGTCATGTGATATTTGTCAGGAGCCAATGCGAAATTTCTATATGCTCAAGAGGCACTTTGAGTCTGTTCACAATGAAAACGGTTACGTTATTTGTTGCAAATTAAAATTCAGAAGGCGCAGTACTCTGGCAGAACATATTTATTTGGGCCATAATGTTGTATATTTATGTGATAAATGCGGTCAAGTTATGGCCGATAATAGAGCTTTGAACGCGCATAGAATTACACATACGAATTGTATGCCAACCGTAAATGTGACCAGTGCGGTTATGCCAAGTCCAGACTGTGACAATGCCAAAGCGATCTGCTTTTCCTGTTGGAACGCTTTGCATTCATTTCATCAATTCTATGAGAAGGTCGAGGAAACACATGATATGTTAATAAACATAAAACCTACAGTCGAAGTTGAGTTGAGGGAAAGTCCGGTACCTGAAATCATTGCAACTGATGTTTCCTCTGGCTTTATGGCTGAGGATATAAAGGTAGAGATAACAGACGATTCTAGCGTTCACCTGCCACAGGTAAATGAAGAAAGGATAATGGATCCACTAGAAGCGATTGGCAAAAGTGATGTTACAGTTAAAGATATAAAATCAGATTCTGAATCAGAAATGCCTCTGTCTTTGTTCGTGAAATATCGAAAACCCACCAAAGTGCTCAAAGTAAAAGACTCGTACAGTACCTCTGTTGTTAAGAAGATAAACCGTAAACGTAAAATAACAGAAGAGGGAAGTGAAAccgaattaattaaaaattggcAATTTACTTCGTATAGTGAAGAGACTAATAGGCGAGTAAGCTCTAAGGAATTTGACGAATTCATTAAACAGAACATGGAGTTGTCGTGCAGCATTTGTCAGGTACCATTGGCTGATTTTGTCGTCCTTCAGGAACACTATCAGCAAGTTCACCATGAACGTGGTTACATTGCCTGTTGTGATAAAAAATTTGACAAACGCGGCGCGCTAGTCGATCACATTCTGTTGCACAAATATCCCGAGTACTTCAAGTGTGAGAAATGCGCTAAAACATTGGGTAATCGTAAAAATTTAAAGGAGCACATGAATATACATGATAAAAAATCTATATATCAGTGCGACAAGTGCAGCAAGAGTTTCCATCGGAAAATACTGCTTGATCGCCATATGGACATTCACGTTTCTGAACGTAAGTTCAAGTGTGGCGAATGTGATAAGTTATTTGTCTCTAAATTCTCACTAGGCCAACATATGTACGGTGTTCATAAGCGTGGATATACGAAAATTTGCGAGCAGTGCGGCAAAGTTTCTCGTGACCTGGAAGCCTTCCGTCGACATCAACTGGATCATACAGATGCACCAAAACCTTTTGTGAAATGTGAAAAATGTGGTGTTAAATTGGCGAACAAAAGCGGCCTTAGAAGGCACTTAAAATCACAGCATgcagaaaatcaaattacaCACGTGTGCAATGTTTGCGGAATCACAAAAGCTAGTATTTATGCACTAAAGCGTCATATAACGTATATGCATAGATATGAGCGATCGCACAAGTGCCCCATGTGCGACAAGGCATTCAAGAGAGCCCTCACACTTAAGGTGAGTCTAGTATTGAACATTTTTATCAATATACACATATTATTAAAGCTGAAAGTCTAG
- Protein Sequence
- MLCILCLNASDRILNATNVSSLIIKHFWLQPNKEDANANVICCSCWDALDSFHKFYEMVEVAYLKLLSTVTATDEDLKREDQSDCDNFDPCISLLSADVKLEVNEHCIVTSLKLDPIPDTETRINSLEALAIKKHKGEVESDSDSEIPLAMLAKQRKSPNQVVSTGDSSIDHYERRLSPLVDDSYDNDDDTDSEIHKKKVKDTASDKNGYNAVKSKACSRKARRAKERKKPQRKVKSPDNETRVKRKIMDPRKKLSHEFEEVIKKNMKLFCSICHVPLANFFLLRKHYHSVHNERGYATCCGRKFRKRCVLVDHIYLHLNPEYFKCDKCDRNMADRRSLEVHMNTHDTSKQRIYQCDECSKSFYRKLLLERHMYTHIPDRKFNCSDCQKLFSSKYTLRQHVNNVHNSAYMKICEQCGKSIRGLEAFRRHQLKHTGMPIPLVQCEKCGVKLTNKYGLKRHINSMHPDTKVLHVCKVCGKIAPSAAALQRHTSYMHKCERNHKCPMCAKAFKKPGGLRPSAENANDKVICGSCWSELHSFHKFYQKVEEAHSKLISSWSAATTDILSAAIRIAGIKSEVGEESDEMETPSSSDDESDYEETSYKANGELITRVTPSMELDDVIKQHIKLSCDICQEPMRNFYMLKRHFESVHNENGYVICCKLKFRRRSTLAEHIYLGHNVVYLCDKCGQVMADNRALNAHRITHTNCMPTVNVTSAVMPSPDCDNAKAICFSCWNALHSFHQFYEKVEETHDMLINIKPTVEVELRESPVPEIIATDVSSGFMAEDIKVEITDDSSVHLPQVNEERIMDPLEAIGKSDVTVKDIKSDSESEMPLSLFVKYRKPTKVLKVKDSYSTSVVKKINRKRKITEEGSETELIKNWQFTSYSEETNRRVSSKEFDEFIKQNMELSCSICQVPLADFVVLQEHYQQVHHERGYIACCDKKFDKRGALVDHILLHKYPEYFKCEKCAKTLGNRKNLKEHMNIHDKKSIYQCDKCSKSFHRKILLDRHMDIHVSERKFKCGECDKLFVSKFSLGQHMYGVHKRGYTKICEQCGKVSRDLEAFRRHQLDHTDAPKPFVKCEKCGVKLANKSGLRRHLKSQHAENQITHVCNVCGITKASIYALKRHITYMHRYERSHKCPMCDKAFKRALTLKVSLVLNIFINIHILLKLKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -