Bscu018036.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459113.1:15789448-15797825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0044 1 11.5 1.1 1 23 49 71 49 71 0.98 2 27 2.7e-06 0.00064 21.6 1.8 1 23 78 100 78 100 0.98 3 27 4.4e-05 0.01 17.8 4.0 1 23 223 246 223 246 0.95 4 27 0.65 1.5e+02 4.7 6.1 1 23 253 275 253 275 0.98 5 27 0.076 18 7.6 0.8 2 21 284 303 283 304 0.94 6 27 0.1 24 7.2 1.5 2 23 314 335 313 335 0.97 7 27 1.3 3e+02 3.7 4.7 1 23 342 364 342 364 0.95 8 27 0.12 29 7.0 0.1 1 23 473 496 473 496 0.94 9 27 2.4 5.7e+02 2.9 1.7 1 21 505 525 505 526 0.90 10 27 0.36 85 5.5 2.3 1 19 535 553 535 556 0.88 11 27 0.004 0.95 11.6 3.1 2 23 567 588 566 588 0.98 12 27 4.3e-07 0.0001 24.1 0.8 1 23 595 617 595 617 0.98 13 27 2.9 6.9e+02 2.6 2.8 2 23 648 669 647 669 0.92 14 27 0.00074 0.17 13.9 3.8 1 23 753 776 753 776 0.97 15 27 0.51 1.2e+02 5.0 0.6 1 21 783 803 783 804 0.93 16 27 0.0056 1.3 11.1 2.5 1 23 813 836 813 836 0.96 17 27 8.2e-06 0.0019 20.1 1.0 1 23 875 897 875 897 0.98 18 27 0.013 2.9 10.1 0.5 2 23 921 943 921 943 0.96 19 27 0.00035 0.081 15.0 1.3 1 23 984 1007 984 1007 0.97 20 27 0.068 16 7.7 0.7 1 23 1044 1067 1044 1067 0.92 21 27 0.001 0.24 13.5 1.9 1 19 1073 1091 1073 1093 0.95 22 27 5.8e-05 0.014 17.4 1.2 1 23 1103 1125 1103 1125 0.98 23 27 1.3e-05 0.0032 19.4 0.3 2 23 1145 1166 1144 1166 0.95 24 27 0.00043 0.1 14.6 4.3 1 23 1172 1194 1172 1194 0.99 25 27 5.9e-07 0.00014 23.7 3.4 1 23 1200 1222 1200 1222 0.98 26 27 5e-07 0.00012 23.9 2.4 1 23 1228 1250 1228 1250 0.99 27 27 0.00041 0.096 14.7 0.2 1 23 1256 1280 1256 1280 0.92
Sequence Information
- Coding Sequence
- ATGTCCAATATAGTAAAACTTGGGTTGGACGACACAGATTTGGCTAGAAGtaaaaaattaacaaagaaCATAAAATCCCGAAGTCCGCGAACAAGGGTGAACACCCGCAGCCGGACTAAGAAAACGAAAACAGCTTCTGGACGCTTTGAGTGCAATGCTTGTACTAAAACCTTCGCATGGAAGAAGGATTTGTATCGCCATGAAAGATCTCACGAGCCCGATACGAAAAAATACTCATGTTCATACTGTGATCGTCGATTCATTCGAAAGGATAAACTCAAATCACATTTACTTGTTCACATAGCGCGGATTGCAAAGCCGACACGCGCATTGAAAAGCGTTCAATATTTCGCTCATAGTTTATTTTCTGAGAAGAAATTCAAAGAAATCAAGTGTATGCTCTGCAACTATGACAAGGCGTCCAACGTCCAGCAGCTCCGTCAGCACATTATCTCACACACTAACCTCAAGTCGATTGAAGAAATAAGAAACAGTGAGGTCGTTAAAAGATTCTTTCCAGGGAAAGATTTACAGGAAGTCATTACCATTATTATTAATCAAATCGAAGAGAATCAGTTTGGGAAATTCCACTCGATAGTCAATGCGGATAGCTACGAAATGGGTATAAGTGATTCAGATGAAAGTGATCCCGAATTAAAAGCCCAGTACACCTGTGAAGTATGCGGGGAGTGTTTCAATCGAAAGCACAAGCTCATGACACATCAGGCATACGAACACACCTTTGAAGATTGTCCCTACAAATGTGAGGGCTGTAAGCTGAGATTCACTTGCCAACGCGTGCTTAATAGCCACCTGAAGCATCACTGTGCGAACCCGGAAAAGGAGCTGCAATGCAAGAAATGTCCGGGTCGATTTACTTGGAAGCAGAACCTCGAGGATCATATGTGTGGCAAGAAAATTATAATCGACAAGGCCACTACCTGCGAGATTTGTGAAATGGACTTCGAGTGCCCTAAAGATCTGAGAATCCACAAAAAGACCCATATACCGGACGGTCAGTCTCACGACTGTTCATTGTGTGGAGAGAAATTTCTTCGTTTTGAGAATCTTCGTTGTCATTTGAAGATGCATGCCAGAAAGGAGAAGCgattgcaattgaaaaaaatatgttgtATGCTCTGCCAGGCGGAATTTTTAAGTATTCGCAGCTTAAAATGCCATTTATTCTCTCATTCCGATGGCCAGACTGATGTAAATTTTAAGAATTGCGGATTTGTTAATAAATTCTACCTGGATGCGAGTGAAGACGTCATATCAGAACAAATTCGGAGTTGTTTCAATCAGCAGCGACTTTGGCCACTGTATATGGCGGTGAATAAATTCGGCCTTGAGATGGTCTTAAGTGATTCCGATAGTGATGATGATCAGCAATCTAAAGAGGGTCCCTCGGAAACCTATATCTGTGAGTTGTGTGATGTGAAATTTCCCCGTATGCAAGCGATACTTCAGCATCAGTACGTCGAGCATTATTCAGAGATGACAAATTTCCCACATAAATGTGATGAGTGTGGCGATCAATTTATTTGCGAAGCCCTCTTGAGGCGGCACAAAAAAAGTGACTGTTTGAACTTGGACAGAGTCCACGCATGTACGAAATGCGGTACTAAATTCACCTGGCATCAAAATTTGGTAGCTCACAATTGTATACGCGGTGATAAAGGCtctgaaaacaataaaaaatgcgAGGTCTGCGGAAAGAAGTTCATTTGGCTAAAAGATCTCCATCGACATAAGCGTAGCCACATTCCCGATGAGAAGAAATTCGAGTGCTTAGTATGTGGAAGGAAATTCAATCGTAAAGATAACATGCGGGCACATATGAAAGTTCACACGGCTGACTATAAGCTGCGGACAAAAGCAATTATTAAATGGGAACACCAGGACGAGAACCTGTGCAGGCCACATGGTGAGAAAAGCATTCAATGCAAAATCTGTTTCTCGAAACACAACTCAATTCGAGATTTGACAAAGCATTTGATGACACACAAAGATCGTAAAACTCTTAAACAGAAAGAATCAGACGTCAGAGATATTTCGTTGCTGATCTATAACAAGCCAATGGATATGCGAACCCTGGCAAAGACAATATCCAAAGATCTCACAAATGGGAAACACGCGCGCTTTTATTCGATCACAAACGAAGTTGGCTATGAATTAAGTTTGGTTGATTCGGAAACTTGCACTGATTTGGATgctgacgatgatgatgatgacgacgatgatgaacTTAAAGGGTATAATTGTAAACTTTGCAATAAAACGTTTGATAGGAAGTTTAAAATATTCGAACACCAAAGAAAGGACCATTCGTGGGATGAACTGCCATTCGAATGTACATACTGCGCAGCGAAATTTGTCAGTGAGAATCTGTATCACTTGCATTTGCAATACGAGTGCGagaacattgaaaaaaaatttaaatgtaagcGATGTCCGCTGAAATTCACTTGGAAAGATAATCTAAAGACTCACGAAAAGTACATGCACTATCAGAACCCAACAATGCCAAAGAAACACCATTGCAATGCCTGCGATAAGAGTTTCCTTTGGCACAAAGACTTGCTAAGGCATAAAAAGATTCATCAGCTCGAAGAGGAGAAATTCGAGTGTACCTGGTGCTTCAGAATATTTATGCGAAGAGATAATCTTAAGGTTCATATGAAAGTTCACCAGAACGCCACTCACCTTTTGCTGCCCGATATCTACTACCTGGCGCGTCCGAATGGCACAAAAGTGGCAGAATGTAAGAGTTGCGATCAGAAGTACTCAACCGTCTTTGAGTTGCTCGAGCACATTCAAAGTACGCATTTACCATATCAAATGCTTGCTAACATTCCCAATCCAACCAGTTACTCCATTACAAACGCATTGGGCTATGAGATGGACATTGATGACTCGGAAACAGAAAAAGAAGAGCCCATGGAAAAATACTCCTGTGAACTCTGCGACGCTCGATTCAACCGCCGCTTTAAACTTTTGCAGCATCAGCAATCGCTCCACTACTCTGACAACATACCGCACAAGTGTATTCATTGCAGCTTCAAATGTGTCTCGGCGGCGGTGCTTAGCTATCACATGCGAACACAATGTATGAACGAAGCGAAGCAATTCCGATGTAGCAAGTGTACGATGCGATTCATGTGGCAGGAGAATCTAAATAACCATGAGAGCTTGATACATGACAGCCCGAGAACGCACACATGCGACATATGCAAAAGGGATTTCGCCACGCAGCACGATCTGAAGAGTCACAAGGATTGTAAACCACCGATAGAGGTTAAATGTTTTGAATGCGAATTGTGTGACCGAAAGTATAACCGAAAAGATCGATTAATGAAACACGTTAAAGTTCATAATACTGACTCTAAGCAACCACGTATAAAAAGTGCACCGTCTACGGATAAGAAGTTCTTGTGCGCATTTTGTGGCAAAGAAGTGTCGAGTTCTTCGAATTTGGTGATACATATGCGAAGGCATACGGGCGAAAAGCCATTCAAGTGTGAGTTTTGTAATAAGGGCTTTCCGCGATCCTCGGATTTGAGCTGTCACAGACGGACGCATACTGGAGAACGTCCACACAAATGTACAGTTTGTGAGAAGGCGTTCTCTCGGTCGTACAAATTGCAAACACACATGCGAATTCACTCAGGCGAGAGGCCATACAAGTGCACATACTGTGAGAAGAGCTTCACGCAGTCCAATGATTTGACGTTGCATGTGCGTAGGCACACAGGCGAAAGACCATATATATGCGAAACGTGTGGTGAGAGATTTATTCAGGGAACAGCACTTCGGAATCATCGAAGGATGCGTGGGCATTATGAAATTTAA
- Protein Sequence
- MSNIVKLGLDDTDLARSKKLTKNIKSRSPRTRVNTRSRTKKTKTASGRFECNACTKTFAWKKDLYRHERSHEPDTKKYSCSYCDRRFIRKDKLKSHLLVHIARIAKPTRALKSVQYFAHSLFSEKKFKEIKCMLCNYDKASNVQQLRQHIISHTNLKSIEEIRNSEVVKRFFPGKDLQEVITIIINQIEENQFGKFHSIVNADSYEMGISDSDESDPELKAQYTCEVCGECFNRKHKLMTHQAYEHTFEDCPYKCEGCKLRFTCQRVLNSHLKHHCANPEKELQCKKCPGRFTWKQNLEDHMCGKKIIIDKATTCEICEMDFECPKDLRIHKKTHIPDGQSHDCSLCGEKFLRFENLRCHLKMHARKEKRLQLKKICCMLCQAEFLSIRSLKCHLFSHSDGQTDVNFKNCGFVNKFYLDASEDVISEQIRSCFNQQRLWPLYMAVNKFGLEMVLSDSDSDDDQQSKEGPSETYICELCDVKFPRMQAILQHQYVEHYSEMTNFPHKCDECGDQFICEALLRRHKKSDCLNLDRVHACTKCGTKFTWHQNLVAHNCIRGDKGSENNKKCEVCGKKFIWLKDLHRHKRSHIPDEKKFECLVCGRKFNRKDNMRAHMKVHTADYKLRTKAIIKWEHQDENLCRPHGEKSIQCKICFSKHNSIRDLTKHLMTHKDRKTLKQKESDVRDISLLIYNKPMDMRTLAKTISKDLTNGKHARFYSITNEVGYELSLVDSETCTDLDADDDDDDDDDELKGYNCKLCNKTFDRKFKIFEHQRKDHSWDELPFECTYCAAKFVSENLYHLHLQYECENIEKKFKCKRCPLKFTWKDNLKTHEKYMHYQNPTMPKKHHCNACDKSFLWHKDLLRHKKIHQLEEEKFECTWCFRIFMRRDNLKVHMKVHQNATHLLLPDIYYLARPNGTKVAECKSCDQKYSTVFELLEHIQSTHLPYQMLANIPNPTSYSITNALGYEMDIDDSETEKEEPMEKYSCELCDARFNRRFKLLQHQQSLHYSDNIPHKCIHCSFKCVSAAVLSYHMRTQCMNEAKQFRCSKCTMRFMWQENLNNHESLIHDSPRTHTCDICKRDFATQHDLKSHKDCKPPIEVKCFECELCDRKYNRKDRLMKHVKVHNTDSKQPRIKSAPSTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCTVCEKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYICETCGERFIQGTALRNHRRMRGHYEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -