Bscu041023.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- grau
- Assembly
- GCA_949775065.1
- Location
- OX459115.1:23547258-23561548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 8.5 2e+03 1.2 0.1 2 23 226 248 225 249 0.91 2 34 0.06 14 7.9 0.1 6 23 257 274 257 274 0.98 3 34 3.8e-05 0.0089 18.0 1.4 1 23 280 302 280 302 0.98 4 34 1e-05 0.0025 19.7 1.5 1 23 308 330 308 330 0.98 5 34 0.00024 0.056 15.5 0.6 1 23 336 359 336 359 0.93 6 34 0.00036 0.083 14.9 0.1 3 23 365 385 364 385 0.96 7 34 0.00019 0.043 15.8 0.5 2 23 394 416 393 416 0.97 8 34 0.015 3.6 9.8 0.6 1 23 423 446 423 446 0.94 9 34 0.0059 1.4 11.1 0.2 1 16 452 467 452 468 0.87 10 34 0.22 52 6.1 4.2 2 23 627 649 626 649 0.92 11 34 0.2 46 6.3 1.7 6 23 658 675 658 675 0.98 12 34 0.00049 0.11 14.5 4.5 1 23 681 703 681 703 0.99 13 34 6e-06 0.0014 20.5 5.8 1 23 710 732 710 732 0.98 14 34 0.00029 0.069 15.2 1.4 3 23 739 760 737 760 0.95 15 34 0.0024 0.55 12.3 0.8 2 23 769 791 768 791 0.96 16 34 0.00035 0.083 14.9 0.6 1 23 798 821 798 821 0.95 17 34 0.2 47 6.3 0.3 1 13 827 839 827 840 0.91 18 34 0.27 63 5.9 0.5 2 23 1019 1041 1018 1041 0.96 19 34 0.032 7.5 8.8 0.9 6 23 1050 1067 1050 1067 0.98 20 34 8.2e-06 0.0019 20.1 1.3 1 23 1073 1095 1073 1095 0.99 21 34 3.6e-06 0.00085 21.2 5.0 1 23 1102 1124 1102 1124 0.99 22 34 0.00018 0.042 15.9 2.1 3 23 1131 1152 1129 1152 0.96 23 34 0.89 2.1e+02 4.2 0.7 2 23 1161 1183 1160 1183 0.94 24 34 1e-05 0.0024 19.8 0.6 1 23 1190 1213 1190 1213 0.96 25 34 0.54 1.3e+02 4.9 2.3 1 17 1219 1235 1219 1235 0.91 26 34 0.26 61 5.9 0.5 2 23 1479 1501 1478 1501 0.95 27 34 0.64 1.5e+02 4.7 0.1 6 23 1510 1527 1510 1527 0.98 28 34 0.0048 1.1 11.4 1.3 1 23 1533 1555 1533 1555 0.99 29 34 7.7e-05 0.018 17.0 1.0 1 23 1563 1585 1563 1585 0.99 30 34 3.7e-05 0.0086 18.0 0.3 2 23 1592 1614 1591 1614 0.96 31 34 2.2e-06 0.00051 21.9 0.5 3 23 1622 1642 1621 1642 0.96 32 34 0.00025 0.059 15.4 0.2 2 23 1651 1673 1650 1673 0.95 33 34 0.00059 0.14 14.2 0.1 1 23 1680 1703 1680 1703 0.94 34 34 0.012 2.8 10.1 0.2 1 17 1709 1725 1709 1726 0.88
Sequence Information
- Coding Sequence
- ATGCTTTGCATATTGTGTTTAACCATTCCTGAGAAATTAATCAACATATTCGAAGAGGACGGAGTCTGTGTTAACGTCAGCAGCATTATTACTAAATACTTTTGGCTAAGGCCAAATCCAGACTGTGACAATGCCAAAGCAATCTGCTCTTCCTGTTGGAACGCTTTGCATTCATTTCATCAATTCTATGAGAAGGTCGAGGAaacacataaaatattaataaacataaaaccTACACTGGAAATTGAGTTGAGAGAAACTCCGGTACCTGAAATTATAGCAACTGATATTTCCTCTGGCTTTATTGCTGCAGATATAAAGGTAGAGGTTATAGACTATTCTAGCGTTCACCTGCCACAGGTGAATGAGGAAAGGATTACGGATCCACTAGAAGCGATTGCAAAAAGTGATGTTACAGTTAAAGATATAAAATCAGAAATGCCTCTGTCTTTGTTGGTGAAACATCGAAAACCCACCAAAGTGCTCAAAGTCGCTGTAAAAGACTCGTACACTACCTCTGTTGTTAAGAAGATAAACCGTAAACGTAAAATAACAGAAGAGGGAAGTGATTccgaattaattaaaaattggcAATTTACCTCGTATAGTCAAGAGACCAACAGACGAGTAAGCTCTAAGGAATTTGACGAATTCATTAAACAGAACATGGAGTTGTCGTGTAGCATTTGTCAGGTACCACTGGCTGACTTTGTCGTTCTTCAGGAACACTATCAGCAAGTTCATCATGAACGTGGTTACATTGCCTGCTGTGATAAAAAATTTGATAAACGTGGTGCGCTGGTCGATCACATGTTGTTGCACAAATATCCCGAGTACTTCAAGTGTGAAAAATGCGCTAGAACTTTGAGTAATCGTAAGAATTTAAAGGAACACATGAATATACATgataaaaaatttatatatcAGTGCAACAAGTGCAGCAAGAGTTTCAATCGGAAAATGCTGCTTGATCGCCATATAGACATACACCTTTCCGAACGTAAATTCAAGTGCGGCGAATGTGATAAGTTCTTTGTCTCTAAATTCTTACTAGGCCAACATATGTACGGTGTCCATAAGCGTGCGAAAATTTGCGAGCAGTGCGGCAAGGTAACTCGTGACCAGGAAGCTTTCATTCGACATCAACTGGATCATACAGATGCACCAAAACCTTTTGTGAAATGTGAAAAATGTGGTGTTAAATTGGCGAACAAAAGCGGCCTTAGAAGGCACTTAAAATCACAGCATgcagaaaatcaaattacaCACGTGTGCAAAGTGTGTGGAAGTACAGCTTCCAGTATCTATGCACTAAAGCGTCATATAACGTATATGCATAGATACGAGCGATCGCACAAGTGCCCCATGTGCGACAAGGCATTCAAGAGAGCCCTCACACTTAAGCCAAGTCCAGAAGACGTCAACGCCAAAGTTATCTGCACATCCTGTTGGAATGCTATAGATATATTCCATACATTTTTCCAGAAAGTGGAGGAAGCCCATTCAAAGTTGATCAACATAAAACTTCCACATAAAGATGAAGCATATCCTGAATTTTCTTCTATAGATTTTAAGTTTGAGACTGACGAGGACTCTAGATTTAATTTGGCACAATTTCAAGAAAATGGACAGGAACAATTTGATGAGGAAAGTGATTCGATGGCAGAGGGAATAAGATCTGAATCAGAGTCAGAAGTTCCTCTGGCGAAGTTAAAGATAAGCGGAAAGCCagcaataaataacaaaatacaacaaactttaataataaataaaagaaaccaGGCAGAAGAAGTAAATTGTGATAGCAGTGACCACAAAAAACTGAAACGAATACCTTGTAACCAGTTCGATGACATTATCAAAAAGAATATAGTGCTATCCTGCAACATTTGCCATAAGTCGTCCAGCAGTTTTTTCGCGCTGAAAGAACACTGCCGATCTGCACACAATAAAATCGGATATGTTTTTTGTTGTGAAAAGAAATTCGATAGTCGTCATGCCTTGGTCCATCACATTTTGTTGCATGAAAATCCCGATCGCTTCAAGTGCAATAAATGCCATAGAATTCTGGCAAATAAGAAGAGTTTATTATACCACATGAAAACACACTTGAATGAAGAACGCATTTATCATTGCGAAAAGTGCAAAAAGGGATTCTCTCGAAAACAAAAGCTTGAGCGTCATATGAAAACACATATAAAACTTCATCAAATCTGTGAGCAATGTGGCAAAGTAACCCGTGACAAGAATGCTCTCAGGCAACATCAGCACCGTGAGCATTCGGGTATACCAAAACAACGTGTCAAATGTCCAAAATGCGGTGTTGATCTTGCGGACAAAACAAGTCTACACACTCATATGAAGTATCAGCACCCGAAAACTGATACTATACATGTGTGTAATATATGCGGAAAGATATCCACTACTGGTTACGGACTTAAGCGTCATATCTTGTACATGCATAAATGTGAACGACGGCACAAGTGTCAAATGTGCGAGAAAGCCTTTAAGACAGCCCAAATACTCAGGCCAAGAGAAGATGATGAAAACGCTAAAGTTATTTGCTCTTCTTGTTGGAATGCTTTGGATTCTTTCAACAGATTCTACCAGAAGGTCGAGGAAGCCCATTTTAAGTTGGACAGCATAAAGCTTCCAATCGAAGATAATGTCGCTGAAAATGATAATTTCGATGCATCATACTCTGACTCGTTCCAATCAGTTGATATGAAGCCTTGCAATGACTCTAAAGTTGATATCCCACAGCTCGATATGGAAAGGACTGAGAATACATTACATGAGCGGAGTGTTGAAATATTTCGTGAAATAAAATCTGACTCCGAGTCTGAAGTTCCGCTATCTAGGTTGAAGCATAAAAAGCATAAAAATGTGAAGCAAAAGCAAAGtaataaaaacagaaacatCAAAGTTAGTGAGGATGATAATGGCGATAAGTCACCCAAACCCGAAATAAACCGAAAAGTTAATCAAGAATATAGAAAAAAACGAGTGTCCTGTCGCGATTTCGATGATGTTATCCGGCAGAATATGAAGTTATCGTGCTCAATTTGCAATGTACTTTTCGAAAAATTTTTCCTTCTCAAGGGTCACTATCGATCCATTCACAATGAAGTTGGTTACGTTACCTGTTGTGACAAAAAATTCGATAGTCGTCATGCATTGGTGAAACATTTATTGTTGCATCAATATCCCGATTATTTTAAATGTGAGAAATGTGGTAAATTGTTTGGTAACGATAAAAATTTGAGGAACCATATGAAAATCCACACAACTGCTAAATGGATTTATCAGTGCAAGCAGTGCACGATTAGTTTTTCTCGGAAACATATGCTGGATCGCCATATGAGAACACATGTGATAACTGATCAAATCTGCGAGCATTGCGGCAAGCAAACTCGTACTAGATACGCTCTTAAGCAACATCAGCTTCGTGAGCATGCTAATGTACCAAGACCACGCGTGCAATGTAAGAAATGCGGTGTCTATCTTGTGGATAATGGAGGTCTTAATTTTCACATGAAGCACCAGCACCCAGAAACCAATGTTTTACACGTGTGCAATATCTGTGGAAAGATATCATCAACTGCTAACGCGCTTAGGCGTCATATCAGGTACATGCACAAATGTAAACCTCGTCACAAGTGTTGTCTATGCACGAAGGCATTTAAGACAGCACAGAAACTTCGGCCAAATGTAGATGATGTGAATACAAATGTTATATGCAAATCCTGTTGGGGGGCACTGGATGCCTTTCATAAATTCTATCTGCAAGTAGAGGAAGCCCATGTTAGTTTGCAAAAAACCAATACCATCGACGAAGATATGTTAAAACTAGAAACCGAAACAGCTCAACAGATTAGCGTTTCTAATATAAAATCATTTGATGAATTATCGCCGGAATTGTTAAAAGCAGATATAAAACTAGAAGTTCACGAGGATGCCTACGTAGCTTTAGCACAAGGCGGCAATCCGATAGTTagagaaaagaaaatagaatCTCACAATGATTCAGCTAGTGAAAGGAAACATTCCATTGATTCGAAGATGTCGGCTGACATTGAAGCTCCACCCGCCAGCTCTACCAGAAGCCGTACATTTGTGGAAAAGTTTTACACAGAAAGCGAATCGTCCAGTGATGATGATAGGTTGGATATAGATGAAGATGAAACTAAAATGCCTGGTTCATCGCCAGACTGGCAAGATCAAAATTCTGATGATGACAGTGACTATGAAGACAGTACATCGAAAGCAAAAAAGCAAAAAGAGCCCATTAAAACAACGAAAAAGCGCACTCGATCGAAGAAGGGTGGAATTAGCAAAAACCCTCGAAAGAAGAAACGAACATCAGAAGAGCAGGCTAAGAAAATTGGACGAATTCAAGAGTACGATGAAATAATTGCAAAGAACATGAAATTATCTTGTACTCACTGTGTGGAGGTAGTTACTAACTTCGCTATTCTGAAAAGGCACTACCGTGTCGTGCACAAAGAATGTGGTTATGTTGCCTGCTGTGGCAAGAAGTTTCGTAAGCGTGGCATTCTCGTCGATCACATATACACTCATCAGAATCCTGAATACTTCAAGTGTGAGAAATGCGGACGGATCTTAGCAAATAGGAAGGGGTTGGAGTGCCACATGCTAACACATGATACCGAAAAGCAGCGCATATATAAGTGCGATCAGTGTGCATTGAGTTTTTATACGAGGCCACTGCTAACGCGACACTTGCAAACGCATATTTCCGAACGCAACGTCAAGTGTCCAGACTGTGACAAATTCTTCTCGACGCAAGATATCTTGCGGACACACATAAACAATGTTCACAATGCAGCGTACACTAGAATCTGCGATCAGTGTGGAAAGTCTTTCCGCAGACCTGATGCCTTTCGTCGACATCAATTGGAACATGATGGCATAACTCAGCCTCTCGTACCATGCGAAAAATGCGGTGTAAAACTTACAAGTAAATACGGTCTCAAACGGCACATGGAATCAATGCACCCCGAAACAGAAGTAAGACATGTTTGCACAACGTGCGGTAAGGTCGCGCCTAGTGCGGCGGCTCTGCAACGTCATATCTCATATATGCACATAATGGAACGTAAACACAAGTGTCCCATGTGCGATAAGGCGTTCAAAAAGACAGGTGGACTTAAGGTATGTATATGCAAATGCGAAAATTTTAAACGAAACTGGGCTATGATTGACAGTATGGATTTGGAAAATGTGTTACTGAAACCAATTGTAAAATCCCTTCATTCGTCCCTCATTCtgtaa
- Protein Sequence
- MLCILCLTIPEKLINIFEEDGVCVNVSSIITKYFWLRPNPDCDNAKAICSSCWNALHSFHQFYEKVEETHKILINIKPTLEIELRETPVPEIIATDISSGFIAADIKVEVIDYSSVHLPQVNEERITDPLEAIAKSDVTVKDIKSEMPLSLLVKHRKPTKVLKVAVKDSYTTSVVKKINRKRKITEEGSDSELIKNWQFTSYSQETNRRVSSKEFDEFIKQNMELSCSICQVPLADFVVLQEHYQQVHHERGYIACCDKKFDKRGALVDHMLLHKYPEYFKCEKCARTLSNRKNLKEHMNIHDKKFIYQCNKCSKSFNRKMLLDRHIDIHLSERKFKCGECDKFFVSKFLLGQHMYGVHKRAKICEQCGKVTRDQEAFIRHQLDHTDAPKPFVKCEKCGVKLANKSGLRRHLKSQHAENQITHVCKVCGSTASSIYALKRHITYMHRYERSHKCPMCDKAFKRALTLKPSPEDVNAKVICTSCWNAIDIFHTFFQKVEEAHSKLINIKLPHKDEAYPEFSSIDFKFETDEDSRFNLAQFQENGQEQFDEESDSMAEGIRSESESEVPLAKLKISGKPAINNKIQQTLIINKRNQAEEVNCDSSDHKKLKRIPCNQFDDIIKKNIVLSCNICHKSSSSFFALKEHCRSAHNKIGYVFCCEKKFDSRHALVHHILLHENPDRFKCNKCHRILANKKSLLYHMKTHLNEERIYHCEKCKKGFSRKQKLERHMKTHIKLHQICEQCGKVTRDKNALRQHQHREHSGIPKQRVKCPKCGVDLADKTSLHTHMKYQHPKTDTIHVCNICGKISTTGYGLKRHILYMHKCERRHKCQMCEKAFKTAQILRPREDDENAKVICSSCWNALDSFNRFYQKVEEAHFKLDSIKLPIEDNVAENDNFDASYSDSFQSVDMKPCNDSKVDIPQLDMERTENTLHERSVEIFREIKSDSESEVPLSRLKHKKHKNVKQKQSNKNRNIKVSEDDNGDKSPKPEINRKVNQEYRKKRVSCRDFDDVIRQNMKLSCSICNVLFEKFFLLKGHYRSIHNEVGYVTCCDKKFDSRHALVKHLLLHQYPDYFKCEKCGKLFGNDKNLRNHMKIHTTAKWIYQCKQCTISFSRKHMLDRHMRTHVITDQICEHCGKQTRTRYALKQHQLREHANVPRPRVQCKKCGVYLVDNGGLNFHMKHQHPETNVLHVCNICGKISSTANALRRHIRYMHKCKPRHKCCLCTKAFKTAQKLRPNVDDVNTNVICKSCWGALDAFHKFYLQVEEAHVSLQKTNTIDEDMLKLETETAQQISVSNIKSFDELSPELLKADIKLEVHEDAYVALAQGGNPIVREKKIESHNDSASERKHSIDSKMSADIEAPPASSTRSRTFVEKFYTESESSSDDDRLDIDEDETKMPGSSPDWQDQNSDDDSDYEDSTSKAKKQKEPIKTTKKRTRSKKGGISKNPRKKKRTSEEQAKKIGRIQEYDEIIAKNMKLSCTHCVEVVTNFAILKRHYRVVHKECGYVACCGKKFRKRGILVDHIYTHQNPEYFKCEKCGRILANRKGLECHMLTHDTEKQRIYKCDQCALSFYTRPLLTRHLQTHISERNVKCPDCDKFFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGITQPLVPCEKCGVKLTSKYGLKRHMESMHPETEVRHVCTTCGKVAPSAAALQRHISYMHIMERKHKCPMCDKAFKKTGGLKVCICKCENFKRNWAMIDSMDLENVLLKPIVKSLHSSLIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -