Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 5e-13 3.6e-10 41.0 0.1 4 42 93 132 92 134 0.88

2 3 1.5 1.1e+03 1.0 0.0 28 37 164 173 154 179 0.85

3 3 3.8e-09 2.7e-06 28.6 0.0 10 39 206 238 201 243 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	5e-13	3.6e-10	41.0	0.1	4	42	93	132	92	134	0.88
2	3	1.5	1.1e+03	1.0	0.0	28	37	164	173	154	179	0.85
3	3	3.8e-09	2.7e-06	28.6	0.0	10	39	206	238	201	243	0.83

Coding Sequence: ATGCCAGCTTATACAATAGAGGGCTTTGCTCAACCAAATGATCAGTACATCCTACTCGAACTGAAAAGCGAAACAGAACCAATGTATAACTATGTCATCACGGAAGTAAAGGAACCACCACCCGATGATGGAGATCCGAATAATCGATCGGTTGATATACAAAATCTTGGCTCTTCACCATACATTATAAGTGTACAAATACCGGTGAATGCGGATAAAGAAGAGGCCAAGGAGAATTCGCCTAAAAAAAAGcgacatttttcttttaatagtaAAAGACTACAAGAAGCCATTGAGGCGGTGGTCAGTAAGCAGCTGACCATAAGTAAAGCTGCCAGTGTATTTCAAGTAACGAAGAGCACCCTCTGGAAGGAAGTCAACAAACACACCAATCACCGCAGAAAAAAAGATAACCAAGAATTGCATCGCAAGATCGCTGATCGTATTTGTTCCGGCGAATCCCTGTCAGGCATTGCAAGGTCCTTAAAAGTTGCAAAGTCGACATTGTATCAACATAAAGTTCGACTGGCGCAGAGTGGTCAGCTACCATCGAATGTGACACTCAAACCATCCACAGATCCCAAGGAGAGATATGCTATGAAAGAGCGTATTATACAAGCGTACCGTGGTTGCCAGATAAATGGCATGTCAATACGTTTTGCGGCGAAGTTCTTCTCAATACCACTGTCGACGCTATGGAAGCACATACGACGTTTTAAAGCTTCTCAACTGATAGCATCCGGAGAAGATGATCCGGTGTGCGAAAAAGCATGTGAACTCAGCAAAGATATTCCGGATGAGCAAACGGCGGATAGTAACGAGAACATAAACCCACATGACTTTGATGAGCTGGACGCCTATGATCGGCGGCAAGAAGAGGCAACCAGCGAAGATGGTGACTTTTTGATAAGTTTTGACTTTGACTCCTTCGAGGAGTATGTTAAGAGAGAACTCGAGTGA
Protein Sequence: MPAYTIEGFAQPNDQYILLELKSETEPMYNYVITEVKEPPPDDGDPNNRSVDIQNLGSSPYIISVQIPVNADKEEAKENSPKKKRHFSFNSKRLQEAIEAVVSKQLTISKAASVFQVTKSTLWKEVNKHTNHRRKKDNQELHRKIADRICSGESLSGIARSLKVAKSTLYQHKVRLAQSGQLPSNVTLKPSTDPKERYAMKERIIQAYRGCQINGMSIRFAAKFFSIPLSTLWKHIRRFKASQLIASGEDDPVCEKACELSKDIPDEQTADSNENINPHDFDELDAYDRRQEEATSEDGDFLISFDFDSFEEYVKRELE

Sequence clustering based on sequence similarity using MMseqs2