Bscu027668.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459113.1:113701209-113702691[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.5e-14 3.9e-11 44.0 0.0 3 43 288 328 286 330 0.91 2 3 0.046 33 5.9 0.0 27 37 359 369 350 375 0.86 3 3 1.1e-16 7.9e-14 52.7 0.0 3 40 397 434 395 437 0.93
Sequence Information
- Coding Sequence
- ATGAATCACCTCAAGTGGATGGGCCATACGGCAACCATCCTGGATATACAGAAGACCCTGAAGAATGATCCAGCCACCTGTGACATTACGCTTTCTTGTCGAGGTAAATCGACGAAGGCCCATCGTTTTGTACTATCTTCGTGTAGTGACCTGCTGCGTGATCTTCTTAGTGATGTACCTATTGGACAGGAGGCCACCATAATAGTACCCGATGTTAGAGGCAGCTTGCTGGACTGTGTATTGAGTTTTGTCTATATGGGGGAGACGAGTTTGTCTTCAACCAATTTATCAGAATTTTTGGAGGCCATCAGTATACTGGGCATTAAAAGTGCGATTAGTTTTGAATGTGCAAACACTAGTACGGCAAACAGTAGCAAGAATGTTGCAGAAATGACCGAAATGGAAGAGGAATTAATGGAAGCCGAACCTGAGCAGGAAATTGTCGAAAAGGAAGAAGAGGAGGATCAAACCGTGGCGGAGAGCAATAGCGTTCGTGACTTGGAATTCCTTGAGGTTTACAATGAACAAGAAAAGATTAGCTACACCATTGAGAACATTACGCCAACTAATCCGAACGAATACATTCTAACAGAAAGCTCTGGCACATTTACTTTAACACCAAACGCAAAAATTGATGGCAACGAAGTTGGAACACTTGTCGAGAAAACCGATGAAGACAACCCCATGATGGAACATTATGTAGGTGATCCAATAGGTGACAGTAGCCAGTGCTCGAGTACAGACATGAAAGATGACAAGTCCAGTAAGAAACTAAAAGATGAATTTAGTGAATTTCAAGCGTTCAGTCCGGACGATTCCAAAGCATATCAAAGCTTCAATGAGACCCAATCGGCCCGCGTTGAAGCATTGGAAAATGCAGTCCTCGCTGTTGTCGATGAGGGTATGAGTCTACAGAAAGCCGCCATAAAGtacaatatttcaaaaactGTTCTCTGGCGGCGAGTAAAAAAGCACCCACTTTACATGAAGACGACACGTGAGAATCCACTTATAACAGCAGCATGTGAACGCTTAAAGAACGGTGATTCTTTGAAAAGCATAAGCCAAGCACTAGATATTCCCATGTCGACATTGCATCGCCACAAGGTGAGACTGGCACATGAAGGACGCCTACCGGAATATGTGACTTTCAAAAAGCGCGGTCCGATGTCGAAAGAAATGTTGAAAGAGAAGCTAACGAAGGCAGTGCAAGCGTGCCTAGGCAATGGTATGTCACAGAACCAAGCTGCAAACGTGTTTGATGTCCCAAAAAGTACATTGTGGCGACATCTGCAAAAGAAAATCTACCGGACAGATAGTTCCAATGATATGAATATTAAGGAGGAAGTCGTTATGCCCTAG
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKNDPATCDITLSCRGKSTKAHRFVLSSCSDLLRDLLSDVPIGQEATIIVPDVRGSLLDCVLSFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANTSTANSSKNVAEMTEMEEELMEAEPEQEIVEKEEEEDQTVAESNSVRDLEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNAKIDGNEVGTLVEKTDEDNPMMEHYVGDPIGDSSQCSSTDMKDDKSSKKLKDEFSEFQAFSPDDSKAYQSFNETQSARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAHEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGNGMSQNQAANVFDVPKSTLWRHLQKKIYRTDSSNDMNIKEEVVMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00310168;
- 80% Identity
- iTF_00240924;