Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.033 8e+02 1.6 8.4 13 19 20 26 20 26 0.96

2 7 1.2e-06 0.03 15.7 17.6 1 19 61 79 61 79 0.99

3 7 0.039 9.5e+02 1.4 3.0 1 12 117 128 117 128 0.93

4 7 2 4.9e+04 -4.4 1.4 6 10 132 136 132 136 0.82

5 7 2.5e-05 0.6 11.6 17.6 1 18 142 159 142 160 0.92

6 7 3.8e-10 9.2e-06 27.0 14.0 1 19 169 187 169 187 0.98

7 7 0.14 3.4e+03 -0.4 0.8 5 10 215 220 215 220 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.033	8e+02	1.6	8.4	13	19	20	26	20	26	0.96
2	7	1.2e-06	0.03	15.7	17.6	1	19	61	79	61	79	0.99
3	7	0.039	9.5e+02	1.4	3.0	1	12	117	128	117	128	0.93
4	7	2	4.9e+04	-4.4	1.4	6	10	132	136	132	136	0.82
5	7	2.5e-05	0.6	11.6	17.6	1	18	142	159	142	160	0.92
6	7	3.8e-10	9.2e-06	27.0	14.0	1	19	169	187	169	187	0.98
7	7	0.14	3.4e+03	-0.4	0.8	5	10	215	220	215	220	0.93

Coding Sequence: ATGAGCATTATGGGTTATTGTACAGAAGCTGTTGATTGCTTTTCCGTCTTCCTATTTGgtCCATGTCCTCCTTGTCCAAGGACAGTATCATCAACATGCTACTGTGGCAAGCAAAATCGTCCTCAACGATGTAGTAGTAAATTTTGGTCGTGTGGTTTAAAATGCGATAAAATTTTGGGCTGTGGACGACATCCTTGCACTAAAAGATGTCATCCAGATGAATGTCCTCCCTGTCCAAAACGTAGTCAACAAAAATGTCAGTGCGGTAGTGAAACTCAATTACGGGAATGTGCTTCACCTACGTGGCAGTGTAATAAAtgtttaGAGGTGGTTTTAAAGACATGTCGGTGTGGTTCACATCAGAAAGAGTTATCGTGTCATAAGGAATTTCTTTGTGAAACAAAgtgtaaattaattaaagattgTCAGAAACATCCGTGCAATAGAAAGtGTTGTGATGGTAATTGTCCCCCTTGTGAAAAACCTTGTGGTCGAGTTTTGGGATGCGGAACACATAAATGTACGTCAACATGTCATCGCGGTCCATGCTATCCTTGTAGAGTAACTGTTACTATAAAATGTCGTTGCGGCGGCACATCAATAACAGTTCCATGTGGGAAACAAAAACGAACCCGACCTCCTCGTTGTAATAAACTTTGCAGGTGA
Protein Sequence: MSIMGYCTEAVDCFSVFLFGPCPPCPRTVSSTCYCGKQNRPQRCSSKFWSCGLKCDKILGCGRHPCTKRCHPDECPPCPKRSQQKCQCGSETQLRECASPTWQCNKCLEVVLKTCRCGSHQKELSCHKEFLCETKCKLIKDCQKHPCNRKCCDGNCPPCEKPCGRVLGCGTHKCTSTCHRGPCYPCRVTVTIKCRCGGTSITVPCGKQKRTRPPRCNKLCR

Sequence clustering based on sequence similarity using MMseqs2