Bneb003562.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- stc
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:82831353-82863555[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2 2.8e+04 -3.4 0.5 15 18 104 107 103 108 0.79 2 18 1.6 3.9e+04 -3.8 1.6 15 19 132 136 131 136 0.81 3 18 0.069 1.7e+03 0.6 0.4 4 10 165 171 164 171 0.96 4 18 6.8e-07 0.016 16.6 12.0 1 18 180 196 180 197 0.95 5 18 0.81 2e+04 -2.9 0.5 5 10 222 227 222 227 0.93 6 18 8.7e-05 2.1 9.8 12.8 1 18 233 250 233 251 0.97 7 18 0.32 7.8e+03 -1.6 1.2 6 10 281 285 280 285 0.90 8 18 3.5e-10 8.6e-06 27.1 13.1 1 19 291 309 291 309 0.98 9 18 0.73 1.8e+04 -2.7 0.9 6 10 341 345 340 345 0.89 10 18 1.3e-06 0.033 15.6 17.1 4 18 358 372 351 373 0.86 11 18 2 4.9e+04 -4.1 1.6 5 10 402 407 402 407 0.90 12 18 0.00034 8.2 7.9 7.9 1 11 413 423 413 424 0.97 13 18 0.18 4.3e+03 -0.7 0.7 4 10 428 434 427 434 0.93 14 18 5.2e-10 1.3e-05 26.5 12.3 1 18 440 457 440 458 0.97 15 18 0.52 1.3e+04 -2.3 0.3 5 10 486 491 486 494 0.93 16 18 2 4.9e+04 -11.8 16.8 10 19 505 515 491 515 0.69 17 18 0.0001 2.5 9.6 11.5 1 16 551 566 541 576 0.83 18 18 0.00055 13 7.3 12.3 1 16 583 597 583 602 0.88
Sequence Information
- Coding Sequence
- ATGTCTCAGTGGAATGGTTATTACAATACTTCAACCCAGACTTCATTGTATCCATCAATAGAAAATAATACTAATGATCAACAACATTTTAATAGTCTACCTGTCGCTCTATTACCAGATAATTATCAGAATTACTAtcagcaaaataattttaatccaAATGTAGGCGTATACGCACCTAATGTTTTTTGGTCCAGTCAACTAGAATTAAATCATTTCACGCAAGAAAGTTCAGCAGTTAATGTATTCGACAATAATATAACACTAGTATGTTGTGAGTTAGTACGTCAAGAGCACTCCATTTGGTCTTGTCAAAATTGTTATCATATTTTACATTTGAATTGTATTCAAAAATGGGCAACATCGTCAAAAGTTGAAGGTGGAGGATGGAGATGTCCGGCCTGTCAACATGTGTACTTAGACATACCAGATACATACTTATGTTACTGCAAAAAGGTATCAGATCCAGTGTATACTCCTGGCCGGCTTCCGCATTCTTGTGGAGAAGTTTGTAATAAAACATCAAAGAGATCTGATTGTTCACACAATTGCAAGTTATTATGCCACCCTGGTCCTTGTCCCGATTGCATTGTTTTTGTAGATAgAAAATGTAAATGTGGTGCGACAACACAAATCGTAAAATGTTGTAGTACGATCAGTTTAACATGTAACAATATTTGTAACAACAAACTAAATTGTGGCGTTCATCAGTGCAAAAAGAAATGTCATATTAAAGAATGTAGTCCTTGTGAAGAAATAGTAAATcaagTATGCTACTGTGGAAAGAAAAAGCAACAAGTTCCATGCACCGCAGATACTGCAACTAGTACATTAATATCTTGTGAAGAAGTATGTAACAAGTTATTGTCTTGCGGTAATCATACCTGCTCGAAAATTTGCCACGATGGACCATGTGAAGAATGTAGTTTATCTCCAGAATTTGTAACGACATGCTATTGTGGTCAAACTACACTTACCGAACAGCAAAAGCGGACATCTTGTTTAGATCCAATTCCATCTTGCGAAAAGATATGCAAAAAGAAACTAAAGTGTGGCCAGCCACATGCGCCACACACGTGTTCATCAAAATGCCATCCTGGTGAATGCCCTCCGTGTGACTTGACAACATTAGTACGGTGTCGTTGTGGACACATGGACAGAGAAGTACCTTGTAAACAGTTAACAGGAAGAGCAGATGATGCTCGCTGTGAAAAAAGATGTACAAAGaaACGCTTATGTGGACGTCATAAATGTAATAAACTATGCTGCATAGACGTAGATCATGAATGTAATCTTCCATGTAATAGAATGTTGTCCTGTGGAAAACATAAATGCGAATCAACCTGTCATAGAGGTCGATGTATGCCGTGTTTACAATCCAGTTTTGAGGAACTGTATTGTGAATGTGGATCTAATGTACTTTATCCACCAATTGCATGTGGAACAAAACGGCCGACTTGTACAAATTTATGTTCAAGACAACATCGTTGTGATCATTCAGTTATGCATAATTGCCACGACGAGCCTGAATGTCCGCCTTGTACAGTATTAACAACAAAATGGTGCTATGGTAAACACGAGCAACGAAAAACGATTCCTTGTAATCAGAAATCATTTTCTTGTGGGTTGCCTTGTGGTAAAGATTTACCTTGCAAACGACATAAATGTATAGCAATGTGTCACGAAGGAGAATGTACGGTGGAAGGGAAAATTTGTAGCCAGCCATGTAATATTCCAAGACGTGGTTGTAGTCACCCTTGCGGACTTCCGTGTCATGACGGAGATTGTCCAAACACTTTATGTAAAGAGATGGTTAAAGTCACTTGTCAGTGTGGACATCGAACAGCTATGCGAACATGTACGGAACAGTCTAGAGAATATCAACGTATTGCCGCATCTATGTTAGTTTCGAAAATGAAAGATGTTGAACTTGGAAATTCTGTGGATATAAAAGATGTTGTAGATACTAATTCCGTGAATAAGGAggcaaaattgaaaatacttgaATGTAATGAAGAATGTCGAATTATTGAACGTAATAGGAGATTAGCCATCGGTTTACAAATCAGAAATCCTGACCTATCACAGAAATTAACACCTCGATATTCTGACTTTATGAAGCAGTGGGCTAAAAAGGATCCATATTTTTGTCAGAAAGTTCATGATAAATTAACGGAATTAGTACAATTAGCAAAACAGtctAAACAAAAATCAAGAAGTTATTCGTTTGAAACAATGAATCGAGAAAAGCGCCAATTTGTACACGAGTATTGTGAACATTTCGGTTGTGAATCTGCAGCGTATGATCGAGAACCAAACAGGAATGTTGTAGCTACTGCTTCGAGAGATAAGGCATGGCTGCCAAGTTACAGTTTATTGGAAGTTGTTCAACGACAGTCTGGCCATCGTAAAGTTCCCGGACCAATGTTATCAAGGACTAGCGATAAATTGTTTAATTCACAAGTATCGAACACTTCTGCATTGACTTCACTACCGTTAGTAAGTAGAGACACGGCCACTCGGGAAGATTCCTCAACCACTGCAGCAGCTGTGTCAAATGCGTTAGAAAGTGATAAAACTCTAGAAAATATTGATTATTTTGATAATCCTCCAGAATAg
- Protein Sequence
- MSQWNGYYNTSTQTSLYPSIENNTNDQQHFNSLPVALLPDNYQNYYQQNNFNPNVGVYAPNVFWSSQLELNHFTQESSAVNVFDNNITLVCCELVRQEHSIWSCQNCYHILHLNCIQKWATSSKVEGGGWRCPACQHVYLDIPDTYLCYCKKVSDPVYTPGRLPHSCGEVCNKTSKRSDCSHNCKLLCHPGPCPDCIVFVDRKCKCGATTQIVKCCSTISLTCNNICNNKLNCGVHQCKKKCHIKECSPCEEIVNQVCYCGKKKQQVPCTADTATSTLISCEEVCNKLLSCGNHTCSKICHDGPCEECSLSPEFVTTCYCGQTTLTEQQKRTSCLDPIPSCEKICKKKLKCGQPHAPHTCSSKCHPGECPPCDLTTLVRCRCGHMDREVPCKQLTGRADDARCEKRCTKKRLCGRHKCNKLCCIDVDHECNLPCNRMLSCGKHKCESTCHRGRCMPCLQSSFEELYCECGSNVLYPPIACGTKRPTCTNLCSRQHRCDHSVMHNCHDEPECPPCTVLTTKWCYGKHEQRKTIPCNQKSFSCGLPCGKDLPCKRHKCIAMCHEGECTVEGKICSQPCNIPRRGCSHPCGLPCHDGDCPNTLCKEMVKVTCQCGHRTAMRTCTEQSREYQRIAASMLVSKMKDVELGNSVDIKDVVDTNSVNKEAKLKILECNEECRIIERNRRLAIGLQIRNPDLSQKLTPRYSDFMKQWAKKDPYFCQKVHDKLTELVQLAKQSKQKSRSYSFETMNREKRQFVHEYCEHFGCESAAYDREPNRNVVATASRDKAWLPSYSLLEVVQRQSGHRKVPGPMLSRTSDKLFNSQVSNTSALTSLPLVSRDTATREDSSTTAAAVSNALESDKTLENIDYFDNPPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -