Bneb029761.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000013.1:15404182-15415020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.46 25 6.9 0.5 2 23 510 534 509 534 0.89 2 8 5 2.7e+02 3.7 0.3 2 22 597 617 596 620 0.88 3 8 0.00034 0.019 16.8 0.1 3 23 760 780 759 780 0.97 4 8 0.01 0.55 12.2 2.8 1 23 786 808 786 808 0.95 5 8 0.00011 0.0058 18.4 2.9 1 23 814 836 814 836 0.98 6 8 0.0089 0.49 12.3 0.2 1 20 842 861 842 864 0.93 7 8 5.5e-05 0.003 19.3 1.1 2 23 871 892 870 892 0.97 8 8 4.6e-06 0.00025 22.7 1.4 1 23 898 921 898 921 0.97
Sequence Information
- Coding Sequence
- ATGGAAACTAAATGGCAACTGAAAATTATAGACCGAAGTAACATCTCTAAACCGACGAAACCAGTATTAAAGAATCCAATTGTGGTTGAATATGATCCGAGAATGAAGGTGTATGGATCACCGACTCAcCAATGGGAAAATTTAGAGCAAGAGGAAATTCTATTTTATAAGGAAATCAATTTACCCCAACAAGTTGAAAATACCGAAGACAGTGACgttgtagaaaaattaattgatgAAATACTGGATGAATCTTTTGAGTTAACTAAAAATTCTGTTGGTGCTAAAAATGAAAGTGGTGTAGACAATCCATGGAATCCTAAAGATGATATGTTAGAAAATTCGCGAAAACGATTACAATCCATTCTACAAAAACAAAGTTTTGAAATAACTGAAAATAGTGAgacaaataatttaagaaatttaaccGAAGAGGAAAGTAGAACTTTACTTAACAATCAAATATTAGAAAAGATACgaaacgaaattaaaattattgaaacccCAAACGTACCCAAACACCCAACTTATCCAGAACCAGAAGAGTTAGTGATGCCTCTGTCAATTCCAAAACCTAGAGAGAGTTCATTTGATCGAGAATTGCGCAGACTAAAAGAGGATTTAGAATCCGCgcgaaaaaataacgttttGGATGATCTACTTACTCGAAATTTCAAAGATCGGAGCACGTCCAAAGAAAGAGCATATATTGGAAGACGTAGAAGTCGCAGCAGGTCCAGAGATTATTCACCGgctaaacgaaaaaaaagagaTCGAAGTGATTCAAGAGACCGATTATATTCTCGACGTAGAGAACGTTCGAAATCGAGATCCAGAAAAGAGAAATACGAAAAGGAGGTGTTCACGCGACGACGAAGAAGATCTAGATCATATTCAAGAGAACGATCTACATCTCACTCTAGATCAAGAAAAAATAAGTACTACGAAGACAACATGTACAGTCGACGACGAAGgcgatcaaggtcatattcacGAGACCGATCAAAAAGTAGATCACGATCAAAGTCAAAGGCAAAACTGACGTCCGAAATTGTTCCATATTCGCGCAGACGATCTAAGTCTAGATCTAATTCCAgagaaaaatcacacaaaaaaacgtCTAAACCAGATTTTCACACTATAACAACTATTTCAAATGTACAAGAACAGGAACAGAATTTATTATCCTCGAAATTGGTAAACAGAACGGAAACAATGATAACCATAGAACAAAAATCTACCATGTTAGAATACGATATGGAAATTGACGAGGATATGGACGACGAGGACTATCTAAACCAAACAAGTTCGGTGATTGGTAGAAAACAGTGGCGAAAAGCTCGCGCCAAAGAGGTGTTCTGTAGcgtttgttcaatttttgtgaACACCCAACAACAATACGAAATACATGCAGCATCcaaaaaacataaaaagaaaGAGAAACTCTGGCAAGCTCTCAGTCAATTGAAACCCGCAGAAAGTATTGCCACGAAAATGATTACCACCGATACACCagatttaaatttagtttgtgAAGTGTGCAAAATGTACAAATTTACATCGGTCGACTCATTTAATGCgCATATGATGTCGAAGAAACACAAAAGTAATTTAGTCGAGTCGATGAACTTTTTATATAATGCAAACTCGAATGACAGTGACGCTAATGACGTAGATCCCGAGGAAATACAACGCTGTTTAAACACATTTTCCCAAGCGATAACCGAAAAAGAGAAAATCGCCGTAgaagtgaaaaataaaagaCGTGGAGGTGATAATAAAAGTCTTTATTGTGAAATATGCGATGTCCATACAACCGGCGAAATATCATATATTGCTcatcTGAATTCGAAAAAACATAAGAAAAAGCTTATGCGTTACATGTACGTGCCAGGACGCGGTGTGAGTGGTTCTGGTGGTGGCCCCACGTTGGGTTTACCGGGAGGATGGGGCAGTGTGGTACGTCCGCCCACGTCGGTGGCGGTCGGAGCCGGTGTCACCGCTCCGGCCGATTTGTTGGCAACGATCAGCATGTTCGAGCAACACGTCAAGGCCGAACCGATTGGATTTTATGCACCACCAACCTCGACGGCAACAAATCGCACCGAGACAAATGCAAATCACACCAGTAGTATTAACGCTACCGatgaaaaaaatcaacaattgaCAAATAATGTGATATGTGCAACGGTCGTTGCTTCAacaacaaaatcaactgctggCGGTAACGCGACGACGACCGGTAGTTCCGGGCACAGCCGTAGTAAACCGCAAGCATGTAAAGTGTGCGGAAAAGTGTTGTCTTCAGCCAGTAGCTATTACGTGCATATGAAATTACATTCGGGAAATAAACCGTTTGCGTGCACTTGTTGCGAGGCGGCATTTTGTCGCAAACCATACTTAGAAGTGCATATGCGAACGCATACAGGTGAACGCCCCTTCCAGTGTGAGTTGTGTATGAAACGTTTCACGCAGAAATCCTCACTGAATACTCATAAACGAGTTCACACCGGCGAACGTCCATACGCTTGTGATATTTGTGAAAAACGATTTGCGGTCAAGAGTTACGTGACCGCGCATCGATGGTCCCACGTGGCCGACAAACCACTTACGTGCGATCGATGTTCACTAACGTTTACGTCGAAAAGTCAATTTGCGATTCATATCCGCACCCACTCGGCAGCTCAGAGTTACGAATGTAATATATGCGGACGAACTTTCGTACGAGACTCATATTTAATACGACACCATAATCGGGTACATCGGGAAAATCCAACACAGgTGGCAGCCGCTCAAACACAAACACAAAATCCAAATCAATCGGCACAAAATGCAAGTAATAATGCGAACAATAGCGGTACATTTACCAGTAACGGAGCACAGTCGCTTAGGTATGTAACAACCAGTACACAAATGTCACCAATACAAGATAAATCATCACCATCGTCAGTAGGGCCACCTTCCGTTGGtccgtaa
- Protein Sequence
- METKWQLKIIDRSNISKPTKPVLKNPIVVEYDPRMKVYGSPTHQWENLEQEEILFYKEINLPQQVENTEDSDVVEKLIDEILDESFELTKNSVGAKNESGVDNPWNPKDDMLENSRKRLQSILQKQSFEITENSETNNLRNLTEEESRTLLNNQILEKIRNEIKIIETPNVPKHPTYPEPEELVMPLSIPKPRESSFDRELRRLKEDLESARKNNVLDDLLTRNFKDRSTSKERAYIGRRRSRSRSRDYSPAKRKKRDRSDSRDRLYSRRRERSKSRSRKEKYEKEVFTRRRRRSRSYSRERSTSHSRSRKNKYYEDNMYSRRRRRSRSYSRDRSKSRSRSKSKAKLTSEIVPYSRRRSKSRSNSREKSHKKTSKPDFHTITTISNVQEQEQNLLSSKLVNRTETMITIEQKSTMLEYDMEIDEDMDDEDYLNQTSSVIGRKQWRKARAKEVFCSVCSIFVNTQQQYEIHAASKKHKKKEKLWQALSQLKPAESIATKMITTDTPDLNLVCEVCKMYKFTSVDSFNAHMMSKKHKSNLVESMNFLYNANSNDSDANDVDPEEIQRCLNTFSQAITEKEKIAVEVKNKRRGGDNKSLYCEICDVHTTGEISYIAHLNSKKHKKKLMRYMYVPGRGVSGSGGGPTLGLPGGWGSVVRPPTSVAVGAGVTAPADLLATISMFEQHVKAEPIGFYAPPTSTATNRTETNANHTSSINATDEKNQQLTNNVICATVVASTTKSTAGGNATTTGSSGHSRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFACTCCEAAFCRKPYLEVHMRTHTGERPFQCELCMKRFTQKSSLNTHKRVHTGERPYACDICEKRFAVKSYVTAHRWSHVADKPLTCDRCSLTFTSKSQFAIHIRTHSAAQSYECNICGRTFVRDSYLIRHHNRVHRENPTQVAAAQTQTQNPNQSAQNASNNANNSGTFTSNGAQSLRYVTTSTQMSPIQDKSSPSSVGPPSVGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -