Bneb013226.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:13738024-13740061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.013 0.72 11.8 0.2 2 23 302 323 301 323 0.94 2 11 0.18 9.8 8.2 0.9 3 19 342 358 340 362 0.85 3 11 0.00085 0.046 15.6 4.2 1 23 368 390 368 390 0.99 4 11 0.0024 0.13 14.1 0.9 1 23 427 449 427 449 0.98 5 11 5.2 2.8e+02 3.6 4.7 1 23 454 476 454 476 0.98 6 11 0.00058 0.032 16.1 0.9 3 23 482 503 480 503 0.97 7 11 1.2e-05 0.00066 21.4 0.9 2 23 510 531 509 531 0.97 8 11 0.00066 0.036 15.9 0.2 1 23 537 559 537 559 0.98 9 11 0.015 0.8 11.7 2.8 1 23 565 589 565 589 0.95 10 11 1.6e-05 0.00089 21.0 0.5 1 23 595 617 595 617 0.99 11 11 0.00013 0.0073 18.1 4.6 1 23 623 646 623 646 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCGAATGTACAATATTCAACATATTCAACATTAGAAGTAAAAGAGATATGtcgtatttgtttaaaaatgtcgCCAGATAAGTCTTCAGTTTGGGATGCAGTATTTATAATTGATATAGGTAACATTCAGTATGTACAAATGATTATGGAGTGTACTTCGGTTATTGTCGAAAAAGATAATGGTTTTCCAGAGTATATTTGTTCTGATTGCTCCCAACAATTGGCAAATGCATACTGTTTTAAACTTCGTTGCGAAAAATCAAATGCAAATTTggaacaaatttttgaaattttaagagCGTCGGGTAAAAGCTGtgattatattttaattgcAAATTTCGGCAAATTTCCAtacataaaagttaaaaatacaacacttgaaaaaaatcaagaaaatgaCTTAGAAATCACCAAAAACATCCTAGAAAATGGAGAATCGTTAATAGACGAAAACCAGATTATACctaaaattgaagaatattttttgGATACAAATGATGCAGATGTTACACTAGAAACGAAAGTAGATATTATGCCAGAATCAAATGAAGGCATTTCTGGAAATGCTATTATGAATAAATCGGAGTTACAAAATCACTTAGAAATCACCAAAAACATCATAGGAAATGGAGAATCGTTAACAGAAGAAAACCAAATTATACCTAAAGTTGAAGAATATTATTTGGATACAAATGATGCAGATGTTACACTAGAATCGAAGGTAGATATTATACCCGAATCAGATGAGGGCATTTCTGGAAATGCTATTAAGACTGAATCCGAGTTAGAAAATTTTGCGTCAGTTGACGATTCTTCATCGACCACCACATATTCTAATTGTCTGCAAAAAGTTGAAAACAAGAATAGCCTCAGTTCACACGTGCCTAAGTCGCCATTGACTTGTGATATCTGCAATGATATTTTTAGGGACAATTCGTCATTAATTGAACATTTTTACATTCATATCAAAATCTCATTAGACTTTAACGATTTCGATGATGAATGCGAGACATATTTATGTTATCCGTGTGATAAGAGTTTTTCCTCAGccgaaaaattaattatacattGTAGCGAACACAGTCAGGGTAAagattatcgatgtcgaaagtGTAACGAAACGTTCGACGAATAcaagttattaaaaaaacacaCGAGAAAACATGAGATTGGACCATACTTTTGTGTTAAATGTCTTTTAAGTTTTAATATGATAAATCAAGTGAAAATACACGAAGAAGTTCAACATCGAGCGTCAGTGGTCAAAGATACTTTTAAATGTCCACTCTGTGAAgacatttttaagaatttattccAATTGAAAAGTCACTTGAAAGAGCATAAAGCCgatttatataaatgtttagtttgttttaaattatgcaACTCAATTGTTAAGTTTAAAAATCATAAGAGAGAACATAATATGTGCAATTTATGTTCGAATTGTGGAAAACAATTCCCTCGGCCGCTGTCTTTGTATGCTCATATTCGATTGTGTCACACGAAGATGAATCGAGTCACATGTGACGTATGTAATAAAACGTATAGTACAGCACAAAGTTTAAAGATTCACAAACGAACTCATACCAAGGAAAAACCGTACATTTGCTCATACTGTCCATACCGTTCAGGATATCTGGGTGATTTACAAAAACATATTCGTATACATACCGGTGATGCCCCATATGCTtgtaaatttccaaattgtgATCAAAGATTTAAGACGGCCAGCCATCGAAATATCCATTATCAGCAACACACGGGTGAACGCAACTATCAATGCCAAATATGTGAAATGAAGTTCGGAAGGTCAGATACTCTTAGGGAACATTTGAGAATACACTCAAGTAAAAAGGAGTTTAAATGTGATATTTGTGGCAAAGAGTTTCGACGTAGACATCATGTAACAATACATAAATCAAGAGTTCACGGTTTACCAAAAGACAAATgcagtagccgtccaagttaa
- Protein Sequence
- MEPNVQYSTYSTLEVKEICRICLKMSPDKSSVWDAVFIIDIGNIQYVQMIMECTSVIVEKDNGFPEYICSDCSQQLANAYCFKLRCEKSNANLEQIFEILRASGKSCDYILIANFGKFPYIKVKNTTLEKNQENDLEITKNILENGESLIDENQIIPKIEEYFLDTNDADVTLETKVDIMPESNEGISGNAIMNKSELQNHLEITKNIIGNGESLTEENQIIPKVEEYYLDTNDADVTLESKVDIIPESDEGISGNAIKTESELENFASVDDSSSTTTYSNCLQKVENKNSLSSHVPKSPLTCDICNDIFRDNSSLIEHFYIHIKISLDFNDFDDECETYLCYPCDKSFSSAEKLIIHCSEHSQGKDYRCRKCNETFDEYKLLKKHTRKHEIGPYFCVKCLLSFNMINQVKIHEEVQHRASVVKDTFKCPLCEDIFKNLFQLKSHLKEHKADLYKCLVCFKLCNSIVKFKNHKREHNMCNLCSNCGKQFPRPLSLYAHIRLCHTKMNRVTCDVCNKTYSTAQSLKIHKRTHTKEKPYICSYCPYRSGYLGDLQKHIRIHTGDAPYACKFPNCDQRFKTASHRNIHYQQHTGERNYQCQICEMKFGRSDTLREHLRIHSSKKEFKCDICGKEFRRRHHVTIHKSRVHGLPKDKCSSRPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -