Bneb000171.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:6501249-6502641[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.1e-05 0.0038 19.0 7.7 1 23 182 204 182 204 0.99 2 9 0.0014 0.076 14.9 1.6 1 23 208 230 208 230 0.99 3 9 0.00052 0.028 16.2 1.5 1 23 236 258 236 258 0.96 4 9 7 3.8e+02 3.2 0.2 2 9 267 274 266 286 0.84 5 9 3.9e-05 0.0021 19.8 2.2 1 23 294 317 294 317 0.97 6 9 1.9e-05 0.001 20.7 1.6 3 23 325 346 324 346 0.96 7 9 0.0037 0.2 13.5 3.3 1 23 352 374 352 374 0.98 8 9 2.3e-05 0.0012 20.5 0.2 1 23 380 402 380 402 0.99 9 9 6.9e-05 0.0038 19.0 1.3 1 23 408 431 408 431 0.94
Sequence Information
- Coding Sequence
- ATGGTACCAATTCAATTACTAAAGGAATTAGATGATTTTAACACAATATTGGCATTTTTTAATGTTGAGGTGATGACCGATTTACGATACCCAAATGGAATTTGTATGGTCTGTCTAAACCAGTTAAGAAATTTCATTCTCTTCAAACAAAAATGTGAATCGTCAttcaattatttgaaaaatgttttaaatgatagtgaaattcaaattttaccaATCAAACTTCCTCATATTTTTGATACTGATAAGTCTGCCGATGAAACTGGCGACCCTGAATATGATTTTGATCAAGATACTAACATAGACGAAAATTATGAGCAGAAGACAGCAGCAGAAATATGTAATGAAacagtaaataatatttatataaaaaccgAGGAACCTGATACGTCTGAGATCACTTTATTTTTGTGCAATAAGTGCAATTCTCCAAGTGAAATATGTATTTGTGTCAATAACCATATAAAATCTGAAATTGATGTAGACGAAAGTAAAAATTCAGACAAAGATAATTTATCTTCAAaagataaaagtaaaaatagttttaagtgTAAGTATTGTGAAAAAACATTTACAAAATCTTATCACCAACAAAGACACGAACGTACTCATGAAAACAGATTTAAATGtgattattgtttaaaattatttttaaatgaaaatacctTAACAAGGCACATGAGAATTCATTTAGGACTAAAGCCATATCTTTGTACTGAGTGTTCTCTGTCATTTTCCACACGCTTTGCACTTGCTcagcataaaaaaaaacatagtgATAATCCTCCAGAAAGAGTAACTTGTCAAAAATGTGGAAAAGCTGTTTTTAATTTACCCATCCATATAAAGTATAAACATAGCGCGCATAGCACACAGAGCTTTCAGTGTCAATATTGTGAGAAGAAATTTTCTTACAAACCCAGTTTACAATATCATGTTAAATCCATTCACGAAAATGTTGGCGAAGTATTATGTACATTGtgtggaaaaaaatttcgtcGGAAAGCTGacttaaataaacataataaatcAGCGCATTCAGACGAACGTAATTATCCATGTCGACATTGTGATAAACGATTTAAAGCTAGTGGTGAACGCTCAAAGCACGAGAGAAAACATTTAAATGACCGTCGATATAAGTGTACATATTGTCCAGAAGCATTTATGGAGAGAAGAGCATTAGAAAATCATATACGGATAcataccggtgaaaaaccattttctTGTAGTATTTGTTCGAAAGCGTTTCGACAAAGTTCAACACTTTACAATCACAACAAATTGGTTCATGGACgattaccaaaaaaattgtaa
- Protein Sequence
- MVPIQLLKELDDFNTILAFFNVEVMTDLRYPNGICMVCLNQLRNFILFKQKCESSFNYLKNVLNDSEIQILPIKLPHIFDTDKSADETGDPEYDFDQDTNIDENYEQKTAAEICNETVNNIYIKTEEPDTSEITLFLCNKCNSPSEICICVNNHIKSEIDVDESKNSDKDNLSSKDKSKNSFKCKYCEKTFTKSYHQQRHERTHENRFKCDYCLKLFLNENTLTRHMRIHLGLKPYLCTECSLSFSTRFALAQHKKKHSDNPPERVTCQKCGKAVFNLPIHIKYKHSAHSTQSFQCQYCEKKFSYKPSLQYHVKSIHENVGEVLCTLCGKKFRRKADLNKHNKSAHSDERNYPCRHCDKRFKASGERSKHERKHLNDRRYKCTYCPEAFMERRALENHIRIHTGEKPFSCSICSKAFRQSSTLYNHNKLVHGRLPKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -