Bneb014840.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:68868905-68870559[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00044 0.024 16.4 0.1 1 23 149 172 149 172 0.92 2 11 0.0014 0.076 14.9 1.8 1 23 244 266 244 266 0.98 3 11 0.0007 0.038 15.8 0.8 2 23 269 290 268 290 0.96 4 11 2.1e-06 0.00011 23.8 2.8 1 23 296 319 296 319 0.98 5 11 0.52 28 6.8 2.4 2 23 324 346 323 346 0.93 6 11 5.3e-05 0.0029 19.4 1.2 1 19 361 379 361 383 0.95 7 11 0.00041 0.023 16.5 1.0 1 23 389 412 389 412 0.95 8 11 0.11 6 8.9 0.5 2 23 423 443 423 443 0.95 9 11 0.044 2.4 10.2 3.1 2 23 451 473 450 473 0.97 10 11 0.036 1.9 10.4 0.0 3 23 484 504 483 504 0.98 11 11 0.011 0.59 12.1 0.9 1 20 510 529 510 529 0.97
Sequence Information
- Coding Sequence
- ATGACAAATAGGAAAATTAGTATTACAGTTAAAGATTTTGAATTGATTTATCgagtttgtttaaaattttccgATAATCTTGTATTAATATCTCAATACGAAATAATTAACATGCTGTCATCTTGTACTTCTGTACAAaTTTCCCCAAACGATAATTTACCAAATCACTTATGTCGTAGCTGTTTAACTGATCTCCGAAACGCTTTCAAGTTTAAACAACTTTCAGAAAATTCGGATAGTAGTTTAAGAAAGATAATTTATGAACATAATTTAGGTAacaaattgaatgaaaaaacgGACACGGCAAAGAATTTCGACGAGAACAATCTTAGTAATGATTTTATTGACTTAATCAATAGTGATTCAAAATCAGATTCTGAAACAGGcctcaaaattcaaaaagattTATTCATAAAAACAGACAGGGAAGATTCATTGTTAGCTCATATTTGCACGATATGTGATATCGGTTTTTCTAATTTAGAtgatttagaattacatattaCGGAATATCATCAGTttgaaattcaaacaaattctCATTTAGAtgatttagaattacatattaAGGACCACCATCAGTTTGAAATTAAGGCTGATTCTCACTTAGAtgatttagaattacatatgaaGGACCATAATCAATTTGAAACTAAGACAAATTCTCATTTAGATGATTTAGAATGTCATAGATATGAAATTACGCCACATTTCGAAAATATTAAACGTTTCCGATGCCCGGAATGTAATTCGGTATTTGTTGGCCAAATACATTTTGAACGACATTTTAAATCTCATGAAAAAACTTGTCCCATTTGTAATGAGACATTTACACGCCATGTTAGATTAGTGGAGCACCTCGCAAGTCATACGGACGAGAGACCATACAAGTGTACACAGTGCAGCAAAGCCTTTAAAACActcagttatttaaaaaatcaccaGCGTAATGTACACCAAGAGCCAGTCCGGTGCGAAAGGTGCGGAAAGATATTCTTAAATCAGAATTCACTCAAATTTCATATTAAACATCAACATGAGAATCGTGGAGTCCGGAAAAAGATTCCTCAAACATTTAATTACGTGTGCGACACTTGCGGgaaaaaattcagtaacaaACATGCGCTAAGAATTCATGATACAATACACAAACCCGATCGACCATACAAATGCACCCAGTGCACCAAAAGTTTCAAACTTCCCTCGattcttaaaaaacatattgAATTGTTACACACTCCGAATAAACCTCCTCCAGAACTAGCCTCGTGCAAGGAATGCGGAAAgcgtgtaataaaaaaaaatatgggaatcCACATGAGAGTCCATCGTAACGATCGAACTCTCATCAAATGCGATCTCTGCTCAAAACAGTTCCTTCATAAATTATCACTCAGGAAACATGTTCGTCGCGAACATGAAAACGCACCCAGGGAGCTAAAACTGCTGTGTAACATATGTGGTAAAGGAGCTGAGTCTCCAGCGATACTCGAACGACATATGCTTTCACACAGTGACAAAAAGAATTTTGAATGTGATCAGTGTGATATGAAATACAAAACGCCATGCGAAGTTAGACGGCACATTTGA
- Protein Sequence
- MTNRKISITVKDFELIYRVCLKFSDNLVLISQYEIINMLSSCTSVQISPNDNLPNHLCRSCLTDLRNAFKFKQLSENSDSSLRKIIYEHNLGNKLNEKTDTAKNFDENNLSNDFIDLINSDSKSDSETGLKIQKDLFIKTDREDSLLAHICTICDIGFSNLDDLELHITEYHQFEIQTNSHLDDLELHIKDHHQFEIKADSHLDDLELHMKDHNQFETKTNSHLDDLECHRYEITPHFENIKRFRCPECNSVFVGQIHFERHFKSHEKTCPICNETFTRHVRLVEHLASHTDERPYKCTQCSKAFKTLSYLKNHQRNVHQEPVRCERCGKIFLNQNSLKFHIKHQHENRGVRKKIPQTFNYVCDTCGKKFSNKHALRIHDTIHKPDRPYKCTQCTKSFKLPSILKKHIELLHTPNKPPPELASCKECGKRVIKKNMGIHMRVHRNDRTLIKCDLCSKQFLHKLSLRKHVRREHENAPRELKLLCNICGKGAESPAILERHMLSHSDKKNFECDQCDMKYKTPCEVRRHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -