Bneb019354.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
-
Assembly
GCA_035578155.1
Location
JAPWDM010000005.1:52277226-52285044[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.23 12 7.9 0.5 1 23 210 233 210 233 0.91
2 10 0.00017 0.0094 17.7 4.1 2 23 270 292 269 292 0.96
3 10 0.0028 0.15 13.9 0.3 2 23 298 319 297 319 0.97
4 10 0.00043 0.023 16.5 4.9 1 23 323 345 323 345 0.98
5 10 0.75 41 6.3 3.4 1 19 354 372 354 374 0.91
6 10 4.6e-05 0.0025 19.5 0.2 3 23 413 433 411 433 0.95
7 10 0.0019 0.11 14.4 7.5 1 23 439 461 439 461 0.99
8 10 2.4e-05 0.0013 20.4 1.6 1 23 467 489 467 489 0.98
9 10 6.3e-06 0.00034 22.3 0.4 1 23 495 517 495 517 0.98
10 10 0.0001 0.0056 18.4 2.5 1 23 523 545 523 545 0.98

Sequence Information

Coding Sequence
aTGTCTGATATCTGCCGAATTTGTTTACAAAAACAAAGTATTATGTTTTCAATATATGATAAATATTCGGACGAGTGCAATGAACCAATATGTGACATGATAATGTACTGTGCTTCGGTTAAAatTGAGAAAGGAGATGGATTACCAAATTTATTGTGTGAATTTTGTAAACGAAGACTTGAAACAGCTTATTTATTTAAACGAGACTGTGAAGAGTCGGAAAATAAATTACGCCAGTACATACGAATGAACGGAATTAACTACTATaatCAACTGAAGAAAGAAAATGATGACTTTAATCCAAACCCGAGTTTCCctctaattttattagaagATAATTCAGAAATTGATCGACATCACTCACAAAACAGTATTAAAAAAGAAGATTCAGACGATGATGATAAAGTAAATGATATTGATGACAACAGCTTCGATGCCGTTGAACCAAAACTAGAGGTTCATTCCATAAAACCGGAGACATTTCAAATAAACACGATACATAGTGAATGTAAACAACAGGATAGTGACGACGATGTGAAATTTGCCTTGAAAAATGAGGAATTTATGccaaaaaaaccgaaaaaacgTCGTAGTCGCGCGAAAACTGACGGTGTAAAACTTCGACGATTTATTTGTTATTCGTGCAGTACAATTTTTTATTCGGATAATGATTTGAGGGTGCATATGTTTGACGAACATCcgaatcaaaaatatttctgcgattttgaaaattgtaatcGTGAATTCTcggaatatttaaaatatgctGACCATTGTCACACCGATCATTACGTAGAAAATTTTCTAGTTTGTCAGAAATGTCACACGACATATcgtcgaaaaaaaaatttggatAGACACATACTAACTAAGCACTGTGATCGACCTCAACAATGTCTACAATGTTTGAAAAGGTTTCCAGATACAAAAGCACTCGAATTACATATGAATATTCATATGGAAAAATATGAATGCCTAACTTGTAAAAAGTGTTTTTCAACTCATGTTGGACTGGAAAATCATAAACGAGTTCATTCAAGCGAATCAAATCAAGTCACGCATGCGTGCGATAagtgtaatcaaaatttttctagtAAAGTGTTTTTGGATCAACATTCTTGTGATCAGAATCCTTCATTGACATCGGAAGAAAAGTCAGATTTGTCCTCACAGAAACAAGTGTCGGTCGTAAAAGGTGGAAAGAGAAAATCGCGTACGAAAGTGAGAAATCATCTTTGTTCCATTTGTGGACGTACGTTTCCTGGACCAACTGccttaaatatacatattcgtCTTCACACGGGCGTAAAACCGTTCAAATGTGAACAGTGTGATTATCGTTGTCACCGACCGAAATTATTAAAGAACCATCGACGAACTCAtaccggtgaaaaaccgtataagtgtagctattgtGAAAAAGCATTTAACAGTCGCGGATATTTAACAATACATGAACGATTCCATTCCGGGTATAGACCATTTGTTTGTACAGCGTGCGACAAAGGTTTTACAAATAGTAAAGATCTTAAAGTACATGCACGGACTCATACgggtgtaaaattattttcatgtgAAATTTGTGGTAATAGTTTTACCACTTTACATTATTTACGTGTACATACCAGTAAACATGGGAAAGGGGTATAA
Protein Sequence
MSDICRICLQKQSIMFSIYDKYSDECNEPICDMIMYCASVKIEKGDGLPNLLCEFCKRRLETAYLFKRDCEESENKLRQYIRMNGINYYNQLKKENDDFNPNPSFPLILLEDNSEIDRHHSQNSIKKEDSDDDDKVNDIDDNSFDAVEPKLEVHSIKPETFQINTIHSECKQQDSDDDVKFALKNEEFMPKKPKKRRSRAKTDGVKLRRFICYSCSTIFYSDNDLRVHMFDEHPNQKYFCDFENCNREFSEYLKYADHCHTDHYVENFLVCQKCHTTYRRKKNLDRHILTKHCDRPQQCLQCLKRFPDTKALELHMNIHMEKYECLTCKKCFSTHVGLENHKRVHSSESNQVTHACDKCNQNFSSKVFLDQHSCDQNPSLTSEEKSDLSSQKQVSVVKGGKRKSRTKVRNHLCSICGRTFPGPTALNIHIRLHTGVKPFKCEQCDYRCHRPKLLKNHRRTHTGEKPYKCSYCEKAFNSRGYLTIHERFHSGYRPFVCTACDKGFTNSKDLKVHARTHTGVKLFSCEICGNSFTTLHYLRVHTSKHGKGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-