Bneb014261.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- Zfa
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:48229732-48231608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 0.72 11.8 2.1 1 23 197 220 197 220 0.89 2 10 0.13 6.9 8.7 4.4 2 23 226 247 225 247 0.97 3 10 2.9e-05 0.0016 20.2 1.2 2 23 253 275 252 275 0.95 4 10 0.00039 0.021 16.6 2.7 1 23 281 304 281 304 0.96 5 10 0.00071 0.038 15.8 4.9 2 23 315 335 314 335 0.95 6 10 1.8e-06 0.0001 23.9 0.6 3 23 343 364 341 364 0.96 7 10 2.7e-05 0.0015 20.3 0.6 3 23 375 395 374 395 0.99 8 10 0.041 2.2 10.2 4.9 1 23 401 424 401 424 0.94 9 10 0.0036 0.2 13.6 1.7 1 23 430 452 430 452 0.98 10 10 0.0009 0.049 15.5 0.8 1 23 458 481 458 481 0.96
Sequence Information
- Coding Sequence
- AtgaatttatcaataaatattgaagattttgataaaatatgtcGAATATGTTTACAATTATCTGAAACGTTGATGCCAGTTTCGTTAAATGACATTGTTAATATGCTCAAAGTGTGTGCTTCAGTAGATataTCGGAAAATGACGAACTACCTAATCAAATTTGCCAGTGTTGTTTTACACGGTTACAagattcatttaattttaaaaatttgtgtaaaaagTCGGACTACAATTTGAGACAATTAATTGCTGAACataaaaagaataaacaaaaagaAGGTTCAATAGAATGTAACGATAAAACGTTCTTGttaaaaaatgaagtttttagTATAGATGACGAACTAAAGAATTATGATTTAGAAACGTTATCAATTAAATCTGAAGATTTACCTTCAGATGATAAAATAGAACACAATTATAATGATGAAACGCTCTCGTTAAAAAATGAAGAACTCCATACAAACGACGAGAAAAAGAATGAAAATATTGAGGAAAAAATTCAAGAGGAAAAATCTAGTTTAGcgaaaaaaaccaaaaacaaaacagacaaGAAAACCAAAACACGaacaaaacttaaaaaatcatttacatGTGAAAAATGTGACAGGAAATTTGATTCACCATGGTCTCTCGGTTGGCATTGTAAAAGTACCCATAAAACGAAAGGAACAAAATGCAGTTATTGTTCAGTAATATGTTATCACCCAGTACATTTAAAGGTCCACGAAGAGACACATAcaaatttaactattaaatgTGAACATTGCGACAAAAAATTCGCTTATATGAGTTCATTAACTAGCCATATTATGTACGCTCATTCAACCGATCGCCCATTTAAGTGTTCCCAATGCGACTCGGCATTCAAGACTAAACATCGTTTAAATGATCACATGAAAGCGATACATGCACTCGAAAAACAGCCTGTAAAACGCTCATCATGTCATATATGTGGAAAGACATTCTCGCATAAAAGCTTGAGAACTCATTTAGAGACTCACGCTGAACGTAAACCACTTGATTGTCCCAAGTGTGGAAAAAAGTATTCGTCAAAAGACGCGTTAAGAAATCACCTGAAACGAATTCACGAGAATGACACCACAGGATGTAAAAATTTGTGTAACGTATGCGGTCGCGGTACCAAAACGAGAACGGAACTCATAAGTCACATGCGAACACacaccggtgaaaaaccatttcaATGTAATAAATGTGAAAAGAGGTATCGCACCGCGTACGCATTAAGTTGCCATGTTCGGCACATACATTTAAATGAAAGGAAACATGTGTGTTCAGTTTGTTCGCAGGCATTTCACGTGAGAGGCGTACTCGAAAATCATATGCGTAGACACACCGGTGAACGGCCATTTGTatgttttatttgtaataaaacgTTCGGTTTTAAAGTTTCTATGCAAATTCACCTCAAACAAGTGCATAAGGTGGAAAATAAACCTAAAGAAAGTATAAACAttgcataa
- Protein Sequence
- MNLSINIEDFDKICRICLQLSETLMPVSLNDIVNMLKVCASVDISENDELPNQICQCCFTRLQDSFNFKNLCKKSDYNLRQLIAEHKKNKQKEGSIECNDKTFLLKNEVFSIDDELKNYDLETLSIKSEDLPSDDKIEHNYNDETLSLKNEELHTNDEKKNENIEEKIQEEKSSLAKKTKNKTDKKTKTRTKLKKSFTCEKCDRKFDSPWSLGWHCKSTHKTKGTKCSYCSVICYHPVHLKVHEETHTNLTIKCEHCDKKFAYMSSLTSHIMYAHSTDRPFKCSQCDSAFKTKHRLNDHMKAIHALEKQPVKRSSCHICGKTFSHKSLRTHLETHAERKPLDCPKCGKKYSSKDALRNHLKRIHENDTTGCKNLCNVCGRGTKTRTELISHMRTHTGEKPFQCNKCEKRYRTAYALSCHVRHIHLNERKHVCSVCSQAFHVRGVLENHMRRHTGERPFVCFICNKTFGFKVSMQIHLKQVHKVENKPKESINIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -