Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: RREB1
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:31844701-31856414[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.011 0.6 12.0 0.3 1 23 155 177 155 177 0.98

2 15 0.00013 0.0072 18.1 0.4 1 23 192 214 192 214 0.96

3 15 1.2e-06 6.5e-05 24.5 3.9 1 23 221 243 221 243 0.99

4 15 0.25 14 7.8 1.4 2 23 359 381 358 381 0.94

5 15 0.98 53 5.9 0.7 1 21 435 455 435 456 0.93

6 15 0.29 16 7.6 0.1 1 23 625 647 625 647 0.96

7 15 2.2e-05 0.0012 20.6 1.2 1 23 656 678 656 678 0.99

8 15 0.0029 0.16 13.9 2.0 1 23 684 707 684 707 0.97

9 15 0.0088 0.48 12.4 2.8 1 23 1179 1202 1179 1202 0.96

10 15 0.00023 0.013 17.3 1.4 2 23 1510 1531 1509 1531 0.97

11 15 0.5 27 6.8 6.3 1 23 1537 1560 1537 1560 0.97

12 15 0.19 11 8.1 4.3 1 20 1622 1642 1622 1646 0.95

13 15 3.5 1.9e+02 4.2 0.8 1 23 1729 1752 1729 1752 0.92

14 15 0.065 3.6 9.6 0.5 3 23 1810 1830 1808 1830 0.93

15 15 0.053 2.9 9.9 5.9 1 23 1836 1858 1836 1858 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.011	0.6	12.0	0.3	1	23	155	177	155	177	0.98
2	15	0.00013	0.0072	18.1	0.4	1	23	192	214	192	214	0.96
3	15	1.2e-06	6.5e-05	24.5	3.9	1	23	221	243	221	243	0.99
4	15	0.25	14	7.8	1.4	2	23	359	381	358	381	0.94
5	15	0.98	53	5.9	0.7	1	21	435	455	435	456	0.93
6	15	0.29	16	7.6	0.1	1	23	625	647	625	647	0.96
7	15	2.2e-05	0.0012	20.6	1.2	1	23	656	678	656	678	0.99
8	15	0.0029	0.16	13.9	2.0	1	23	684	707	684	707	0.97
9	15	0.0088	0.48	12.4	2.8	1	23	1179	1202	1179	1202	0.96
10	15	0.00023	0.013	17.3	1.4	2	23	1510	1531	1509	1531	0.97
11	15	0.5	27	6.8	6.3	1	23	1537	1560	1537	1560	0.97
12	15	0.19	11	8.1	4.3	1	20	1622	1642	1622	1646	0.95
13	15	3.5	1.9e+02	4.2	0.8	1	23	1729	1752	1729	1752	0.92
14	15	0.065	3.6	9.6	0.5	3	23	1810	1830	1808	1830	0.93
15	15	0.053	2.9	9.9	5.9	1	23	1836	1858	1836	1858	0.98

Sequence Information

Coding Sequence: atgcaAGATTTGTATGGACTTAGTCCCTCGTTACCCAATAGAGAAGAAACTCCGGAGAAAACGACAATTGCCACATCCGGTTCATCACCACCGCCATCTTTAATTGTCAGTCAAGATATCAAAATGGAACGCACTGCTACTGATACCAAAGAAGAATACCAAATATCGACCAGAAGTGGAGGCCACTATCAGCGTATCATCCAAAAGTCACTACGTCAAAACGCAACTGCGGCAGCTAAATCACCAAAATCGGTCACCGCACCAAGTAATGGTAACACAGGTAGTATCAACCGTGAACAAGAAAATCACCAGAACGATCACCAGCACTCGTCCGATGATAATAGTGACGTGAAAAATTTGGCAACAACTGACGAAAGATCTACACCACCACGTGACGAATCCATCGGTAGTGGAAATATTTCAAGCAACGAAGAAAGCGCCGAATCCACAAGCCCAAATAAATATCGATGTTCGATCTGTGATACGATAACGGATAACGAAAATGATTACTTAAATCATATTCGACAACATGACTCAGGTTCGCCGCATTTGGAAAATCCCACCGATCAACAGTTCACATGTTCTGTGTGCCAGAAAAGTTTTGGATCCAGCATGAACTTAGAACGCCACGCTCTATTACATTCAAACAACGAACGACCCTTTCGGTGTAAGATATGTTCGATCACTTTTACTACAAACGGCAATTTGCACAGACATATGCGAACCCATTCATCAGGGGGAAATCAATCGGAGTATGAATCCGATGAAAGTACAGATAGTTCATCCACGAGCGCAAACCATCAACAAACACAACGAAAATCTCAACGAATGCGACGACGATTCGaatataacaataacaattacAACAAAAGGaaagtcgaaaatatcgaactAAACACCGAAGATCAACCATCTCCCACACAACACGGTCGACGTCGactaaaaactgtaaataacaATACAATCGATGCACTTACACAAAAGTTTCATTGCCCCGTTTGTGATCGAGAAGATTTTGCATCACTAAATGTATTCGAAACACATTTAGAAGAAGTTCATCcagaatatcaaattaaatGTGAACAATGTAATCTCGGATTTAAGAATCACCGCGTATTAAACTTACATCGCTATATGGTACACCTGAGTTCGAACGAAATTGAAGCAGATACTCAACAAAAAAGTATTGTTGGCTTCAAAGATCTCACTTTTGTCGATTTTTCGAGCGAAAAATTTCCAATCATTGCAAAAGCGATGTGTGAAAAAACGTTACATCGTGCAAGCAACGAAAATGATCTAAATTTTCAGTGTCAAAAATGTTCACGGGGTTTTCCATGCATGAGTGCCTTGGAAATCCACCAACAGTCGTGTCTAAAAGAGACGAACAATTACGGATCATTAAGCGATGAtgaacaaaatcaaaataatccaAAAAGTGAAGAGGACGTCAAGCGCAGTGACTTTTTTGCCGGGTTAAATCTCCAAAATAAAACGCAGAAAGAGGAGTATGAAGAAATGCCATTCACACCGAAAATTAGATTAAAAGAATGTTTGGCAAAACCAGATTTTCAATTACCAGCCACCTTAAATCATATGGCACGATTGCCAATTGACACCACCAAAGATCTAGCGGATATACAATCGATTATATCTGTTACTAGTGCTCAAAGTTTACTCCAACAACTCACTGCTCCAAAAAGCACCCCACCACCCGTCACAAATATTCCATTACCATTTCCCATGCAAATTACCCCACCCGACTCAAATCCACGTCCTCATTTACCTTCTTCATCATCGCAAGAATCACATCAAGAAGAAGAACAACAAGATCAATTTGCTGCTGAGTTCCGTAAAATGAAATTACGCGGTGAATTTCCTTGTCGTCTCTGCACGGCAGTGTTTCCAAACTTACGTGCGCTGAAAGGACATAATCGAGCCCACTTAACTGGTAATGGAAACGGCCCATATCGATGTAATATGTGCCCACATTCGTCAACCGATAAAGCAGCCTTGGTGCGTCATATGAGAACTCATAATGGTGACCGGCCTTACGAATGTGCAGTATGCAACTATGCGTTTACAACAAAGGCAAACTGTGAACGACATTTACGAAACCGTCATCGTAAGGTAACACGCGAAGAAGTGAAAAGATCCATTATCTATCATCCGTCAGAAGATCCTACAAACGATGAAACTCTGGCTACGTCGTTAAAAGGATTCACCCCACCCCGACGAAATGATGAATTTTCGAAATTGCATTTGATGTCAGAAGCGAAGAGAGCACTCTTTACAAATTCAGTTCCCGTAGCTGATATACCCTCCACTTCATCATCTATCCAAATACCAGACATTCGTTCAGTAATGTCGAAAATTTCTCTACCAAATCCCGATTTATCGCCAACTCTTCACCTTTCAAATCCTCCACTATCAAGAATGAAAGATGAACCATTAAATTTACCAAACATTGTAAAGAATAACTTAAATGCCTTGAAGGAACAtcgaatttttccaaaattgtcGAGtgctttgaacctgtcaaatgACAGTCATAAAGATGATTTAACTCTTCCACTAGCAACTCCAAAAAttcaagttaaaaatttcaacGAACTCAAAGAAATACCTGAAATAGATACTCCAGCGAAAAGTGAACACACTGACTCAGAGCCTGAAGATACTTACTCAACTCATTCTACGCTAATGTCAACACCGCTTTCACATTTTTCGAGAGAACCAAGATCCACGGTGGCCCCGATAGATCTAAGTATGGACGTGTTAGACTTAAGTAAGAAAAAGCGTGAACCTACACCCGAACCAGAGATACAAACTCACAATCATAACGAGGATTCCAATGATGAACCACAAGATTTCACGAAAAAAACTCTCAATCAAAATCTTGATGGCACACCTCCGCCACAACCTCAAGTACCCACTTCATTCTTCGAAAAAACACAGTTATTACTTGCTCAACAATTGTTGAAGCGTGGGGTTGCTGGAGCTCCACCTGGGATTCCACCTAGTTTCTACGCTTCTCATTTACAGAATCTTTACAGTGCAAGATCACCCGTTCCCACTTCGCCATTGACTACCCCTCCGCAATTTGGAAATATTCCCCCATTTGGGCTTAATCCATATTTCCTACAACCACATCCATTTTTAACACCATCCGCATCACCTCAAGATTTTCAAGAAATGAAAGAGCGCATCCAAAAAGAAATTATTCGTGGATTACAACTTAGCGGCGGTGGGCTGATTATGGAACATTTGGCTAGTGAACGATTACAAgcgtttcaaaaacaaaatgaacaaaaatcagaattttccaTCAAGTCAGAAGACAAACCACTAACTGTGGATACAAATGATTCGTTCAATCTCGATTCTAATCTACGATCTCCAGTAAAACAGTCATCAACTGTACAAAAACCTactgaaaatattatatcaCACACACCAAATTCAGTTAAAATGGTAATTAAAAATGGTGTCTTAATGCCAAAACAAAAACAACGACGATATCGAACTGAAAGACCATTTTCTTGCGAACATTGCTCGGCCAGATTCACATTACGCTCAAATATGGAACGTCACGTCAAACAACAGCATCCACAATTTTGGTCTCAACGGCAACGTTCAAATATGTCGAGTGGAGTTCCTGGTCGGAAACCATCCTTACAAATACTGCCAAGTGTACAATCACAAACACAACCGAACTTTGATGCACAAAATTTAAGTTTACCTAAAACTCTTCCAAATGTATCTAAAGATATTCCTCCTAGTTTTTCCCTGGCAAATCTAAACGATCTCAATAAGCAACCGCTGCTAATAAGTGACCACGTCAAATTTGCAATTTTGGCTCAACAACTTAAGCAGCAATTGCAAAATAATTCTGAACCGCCAAAAACAAACGAACCTATGACAACTGAAGAAAATACCAATGAAAACGAtgatgaagaagaagaaaaCGACACTCTAGTGATTGATGAGAATTCTCAACAAAGTAACACCAATGATGTCCAAAAGCAAACTGAACTAGAGATCCCAAAGAATGATCATTTGCCAACTGTTTTACCTCAACAAAATGAACAGAGAAAAACTTTGGAGCAAAAAATGACTGAACTGCgactaataaaagaaaaattactagAGAAACAGCAACAAGAGTACGcggaaaaagtaaaagaaggaATCAAAGTAACTGAACAGACACGGGACGAAAATCATCGAAACGAAGATTTAGTACCCGTCTCAAAATTACTCGATAACGCTGCTCAAATTCCATTTCGTGAATATTTCCGTCGAGATACGGAAGACACTGAAACACCGTCCGAAGAGGATGAAGAAGGTTTAGTAGCAAGCGGAAGCACGAGTGAAGGAAACATATCCGGAAGTGATGGAAATAGATCCGAGTGCGAAGCAAATAATGCCAAAGCTAACGTTGCAGCTTCTAACCAACCGAACTCCAACCAGCAACCAGATGTTCCTGTGAAGAAAAAATCAGCATATTCTTTGGCGCCAAATCGTGTTACTTGTCCCTATTGTCATCGTAAGTTTCCATGGTCATCATCACTGCGCCGACATATTTTGACGCACACAGGCcagaaaccatttaaatgttCCCACTGTCCACTACTATTTACCACGAAATCGAACTGTGATCGTCATCTGTTACGTAAGCATGGAAACCTcacaaataacaataataatagcaataacaacaatccCAGCAATAACACCGTCAATACAACAATTTCAACACCCAATCCCTCGGGAAATCCAACATCCCAAAATAGTAGTAATGACCTCCCGCCAAATGTTGCACTGCCAACAAATTATATGATGCGCAACGTTCCTGAACGACCTTTTAAATGTTCAAACTGTCCCAGttcaacattttcaacattGAGTAATCTCAAGAAACACATGTCTTGTAAACATAACGATTCCACAATTATTGGTTTGTCCACTCAAAAGGACGAACGACCGATTGGAGGAAGTATTTATGATAGCCATTCATCCGAGGATGAAAATGCCGTATCAAAAGTCCAAgtggaaaaaattatcaaaaattatcaaaatgacTGTTGGGAACAACAAATCAATATTGCTCAAAACAATAATGGTGACTCAAACGCAAATATCACTCACATGACCACTCAAACTCAGACAAACACCGACTTACCCTTTAAATGTCACCTATGCGACAGTTCGTACGGTGAACGTCAAGACGCACTAGATCACATCAAAGAACAACACACGTCCGAATATGAACTTCTAATGTCCAAAGGGGCATTAGATAGTCAACAGCAATCCGATCACCAATCAAGCAACACTCAAATGGATCAAACGAATAGCGACGAACAGTTGACCGACGATCAAATCCATTTACGCGGCAAATTCCCTGATTACGCCAACCGTAAAGTCATGTGTGCCTTCTGTATGCGTCGTTTCTGGTCTGCCGAAGATTTACGACGTCATATGCGAACACATACCGGTGAGCGACCCTTCTCGTGTGATGTATGTCGACGGCGATTCACGTTAAAGCATTCCATGTTACGTCatagaaaaaaacataaaattgccGATGAAAATTTCTTGgcaaaaaatttaatgtgcgTTGACAATGGAACTGGTGAAGACGCCATGCGTCAAAATAGCAGTGAAAACGAAGATAATGTCAAGTcaaatgaaaataacaataataacattGTCTCCAAGTCAATAGCCCCGCGAGAATCGGAGGAACGTGAGGGAGGCACCgatttaataagtaatttactaGGAATACGAGATAGCTCAATTATTGATCAGGTATTACGATCATCGGCAGATGACGCTGCTAAATTATTAGGTGTTAATAAAGCTAACGAATAg
Protein Sequence: MQDLYGLSPSLPNREETPEKTTIATSGSSPPPSLIVSQDIKMERTATDTKEEYQISTRSGGHYQRIIQKSLRQNATAAAKSPKSVTAPSNGNTGSINREQENHQNDHQHSSDDNSDVKNLATTDERSTPPRDESIGSGNISSNEESAESTSPNKYRCSICDTITDNENDYLNHIRQHDSGSPHLENPTDQQFTCSVCQKSFGSSMNLERHALLHSNNERPFRCKICSITFTTNGNLHRHMRTHSSGGNQSEYESDESTDSSSTSANHQQTQRKSQRMRRRFEYNNNNYNKRKVENIELNTEDQPSPTQHGRRRLKTVNNNTIDALTQKFHCPVCDREDFASLNVFETHLEEVHPEYQIKCEQCNLGFKNHRVLNLHRYMVHLSSNEIEADTQQKSIVGFKDLTFVDFSSEKFPIIAKAMCEKTLHRASNENDLNFQCQKCSRGFPCMSALEIHQQSCLKETNNYGSLSDDEQNQNNPKSEEDVKRSDFFAGLNLQNKTQKEEYEEMPFTPKIRLKECLAKPDFQLPATLNHMARLPIDTTKDLADIQSIISVTSAQSLLQQLTAPKSTPPPVTNIPLPFPMQITPPDSNPRPHLPSSSSQESHQEEEQQDQFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLTGNGNGPYRCNMCPHSSTDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHRKVTREEVKRSIIYHPSEDPTNDETLATSLKGFTPPRRNDEFSKLHLMSEAKRALFTNSVPVADIPSTSSSIQIPDIRSVMSKISLPNPDLSPTLHLSNPPLSRMKDEPLNLPNIVKNNLNALKEHRIFPKLSSALNLSNDSHKDDLTLPLATPKIQVKNFNELKEIPEIDTPAKSEHTDSEPEDTYSTHSTLMSTPLSHFSREPRSTVAPIDLSMDVLDLSKKKREPTPEPEIQTHNHNEDSNDEPQDFTKKTLNQNLDGTPPPQPQVPTSFFEKTQLLLAQQLLKRGVAGAPPGIPPSFYASHLQNLYSARSPVPTSPLTTPPQFGNIPPFGLNPYFLQPHPFLTPSASPQDFQEMKERIQKEIIRGLQLSGGGLIMEHLASERLQAFQKQNEQKSEFSIKSEDKPLTVDTNDSFNLDSNLRSPVKQSSTVQKPTENIISHTPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHVKQQHPQFWSQRQRSNMSSGVPGRKPSLQILPSVQSQTQPNFDAQNLSLPKTLPNVSKDIPPSFSLANLNDLNKQPLLISDHVKFAILAQQLKQQLQNNSEPPKTNEPMTTEENTNENDDEEEENDTLVIDENSQQSNTNDVQKQTELEIPKNDHLPTVLPQQNEQRKTLEQKMTELRLIKEKLLEKQQQEYAEKVKEGIKVTEQTRDENHRNEDLVPVSKLLDNAAQIPFREYFRRDTEDTETPSEEDEEGLVASGSTSEGNISGSDGNRSECEANNAKANVAASNQPNSNQQPDVPVKKKSAYSLAPNRVTCPYCHRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNLTNNNNNSNNNNPSNNTVNTTISTPNPSGNPTSQNSSNDLPPNVALPTNYMMRNVPERPFKCSNCPSSTFSTLSNLKKHMSCKHNDSTIIGLSTQKDERPIGGSIYDSHSSEDENAVSKVQVEKIIKNYQNDCWEQQINIAQNNNGDSNANITHMTTQTQTNTDLPFKCHLCDSSYGERQDALDHIKEQHTSEYELLMSKGALDSQQQSDHQSSNTQMDQTNSDEQLTDDQIHLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCRRRFTLKHSMLRHRKKHKIADENFLAKNLMCVDNGTGEDAMRQNSSENEDNVKSNENNNNNIVSKSIAPRESEEREGGTDLISNLLGIRDSSIIDQVLRSSADDAAKLLGVNKANE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -