Bneb017624.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000004.1:65841703-65858140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5 1.3e+02 4.7 0.0 1 23 185 207 185 207 0.94 2 12 0.0011 0.061 15.2 1.2 1 23 212 234 212 234 0.98 3 12 0.11 5.9 8.9 2.8 3 23 243 264 241 264 0.95 4 12 0.0016 0.085 14.7 6.1 2 23 269 290 268 290 0.97 5 12 0.026 1.4 10.9 1.4 1 23 296 319 296 319 0.92 6 12 4.7 2.6e+02 3.8 1.0 2 23 324 345 323 345 0.89 7 12 0.00026 0.014 17.2 0.9 2 23 354 375 353 375 0.97 8 12 0.047 2.6 10.1 0.2 1 23 381 403 381 403 0.96 9 12 0.00022 0.012 17.4 2.1 1 23 409 431 409 431 0.97 10 12 3.2e-06 0.00018 23.2 1.6 1 23 437 460 437 460 0.98 11 12 1.3e-05 0.0007 21.3 1.5 1 23 466 488 466 488 0.97 12 12 0.075 4.1 9.4 0.1 1 23 494 517 494 517 0.94
Sequence Information
- Coding Sequence
- ATGGATATAAAGTATTAccaacaaaatacaaaaaatgaagATGGATTACGTTCCGACTACACTAACAGTAAAATTGTGGAtataatatcaaaactgttaGGTGAACAATTTACTATTATAATTGCTGAAAACGACGTAATTTGTCTCAAATGCTTAAGtcttattaataatattgataaacTGGAGTATGATTTAGAACAAGCACGCGCTAAGATAATGCAAAATATTATGACCAAATATAAAATACACTTAAACGAGCTGGATATTGGTATAAGGAAAGAtgttaaattatcaaataataaattggAAAATAACGAATCGGCAAAAGTGGATTCAACTGAACTTACTGAACTGAATTCAGACCAAACAGCAACTAGTGATGTAGAAAAAGGAGCTAAAGAATTTTTAGGTGatctattactttttaaaaatgataacaatCAAATGAAtgagaaaaatgaaattcgaaCAAATGCAAATTCGAAAAGTACAATCAGTGATTTACTAGTCAAAGAAAATGGTAGTTTACCGCATAAAGAGTACAGGGCAGTGTATCTGTGTGCAATATGTAATTATGAAACACCCATCGATTCAGAAATGAAAATTCACATTGATACACACGCAAAAGATGGTTACAAATGTAATAAATGTAATTCAATGTTTAAATCAGCTCAAATGCTGGATGCACATTTGAGTAAACATGCGTCAATTGCTCAACCAGTCAATTGTAATATATGCAATATTGAATGTGTAGATAAATTACATTTACGTAGTCATAAGAAAAATGtacataaaattcatttaacatGTCATTATTGCAAATATGTTTGTAAAAATCGTAAAGAATTGCAGTTACACATTCAGAAGCataatggaaataaaaaatttgaatgtgAGgattgtaaacaaattttcacccGAGAAGTTTTGTTGAAATGCCATCAAGAATATGCTCATCGGATTGATAAAAAATGCAAGTTTTGTGGTAAAGAAATATTGGTGTTAAAAGAACTTCGTTTGCATGAGAAACGGCATAGACGGCAGTTAAACTCCAATTTAAAATGTCCccactgtgaaaaaattttgaaaacaaagACTGGTTTACGGGTACATATAGCAAAACATACTGGTGATTATAAATTCTTTTGTGAAATCTGCGGTCGTGGATGTATGTCACTCGTGGTATTGCAAGAACATATGGGTGTCCATACGAAAGAAGAACGTTATGTCTGTGATGTTTGTGGGAAAAAATTCTGCTTCAATGCAACATACCGCGTCCATAGaaTGTGGCATGATAACCCAAAACCATATACTTGTAAAGACTGTGGTAAAAATTTTGCACATACATCATTATTGGCAGTGCACCGAAGGCGAGAACATACTGGTGAACGCCCATACATTTGTATGAGTTGTAACATGGCATTTACTCGTAGTTCTTCCTTGAAAAGACACCGAAGAATTCATACGGGTGAACGACCATATGTTTGCGTTTGGTGTAAAAAAGGATTTATAGAACGAAATTTatggGCAAAACATTTGGCAAATGAACATGATGATTAtacagaaattaataataaacaaaaatgtgaGTATAAAATGGTCATCAAACCGGAACAGGAAACAGATTCAAAATTGATAACAGATAGCGATCAAAATAATGAAGAAGAAATGcaagaatttattattattggcaATACAAATCTAGAAAATGTTGTTTTCTATGGCTTACCGTCACAAGTGGTCGATACAAATGAAGATGCGAAGATTCATACGAATATTGACGCGTCAGAATTTAAAGCTACCATTTTAATGGAACCACCAGCTGACTGTGATGAACAATTGAAAGAGGAACAGCCCTCACAGCTACTTGAAGGAATCGATGAAAccaatattataattaaaacagaAGAAGGTGATATGGTGATACGAAATGGTCAATTAGTTCCTCttgcaaatattttataa
- Protein Sequence
- MDIKYYQQNTKNEDGLRSDYTNSKIVDIISKLLGEQFTIIIAENDVICLKCLSLINNIDKLEYDLEQARAKIMQNIMTKYKIHLNELDIGIRKDVKLSNNKLENNESAKVDSTELTELNSDQTATSDVEKGAKEFLGDLLLFKNDNNQMNEKNEIRTNANSKSTISDLLVKENGSLPHKEYRAVYLCAICNYETPIDSEMKIHIDTHAKDGYKCNKCNSMFKSAQMLDAHLSKHASIAQPVNCNICNIECVDKLHLRSHKKNVHKIHLTCHYCKYVCKNRKELQLHIQKHNGNKKFECEDCKQIFTREVLLKCHQEYAHRIDKKCKFCGKEILVLKELRLHEKRHRRQLNSNLKCPHCEKILKTKTGLRVHIAKHTGDYKFFCEICGRGCMSLVVLQEHMGVHTKEERYVCDVCGKKFCFNATYRVHRMWHDNPKPYTCKDCGKNFAHTSLLAVHRRREHTGERPYICMSCNMAFTRSSSLKRHRRIHTGERPYVCVWCKKGFIERNLWAKHLANEHDDYTEINNKQKCEYKMVIKPEQETDSKLITDSDQNNEEEMQEFIIIGNTNLENVVFYGLPSQVVDTNEDAKIHTNIDASEFKATILMEPPADCDEQLKEEQPSQLLEGIDETNIIIKTEEGDMVIRNGQLVPLANIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -