Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:36547786-36551014[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.015 17.1 1.4 1 23 148 170 148 170 0.98

2 11 0.019 1 11.3 2.0 1 23 177 200 177 200 0.97

3 11 0.013 0.71 11.8 1.3 2 21 207 226 206 227 0.91

4 11 0.00065 0.035 15.9 0.5 1 23 234 256 234 256 0.97

5 11 0.0033 0.18 13.7 0.5 1 23 328 351 328 351 0.96

6 11 0.00018 0.0098 17.7 7.0 1 23 357 379 357 379 0.99

7 11 0.0095 0.52 12.3 2.5 1 23 385 408 385 408 0.94

8 11 0.0026 0.14 14.0 0.6 1 21 415 435 415 436 0.91

9 11 0.00038 0.021 16.6 0.3 2 21 445 464 444 465 0.94

10 11 4.1e-07 2.2e-05 26.0 1.2 1 23 473 495 473 495 0.96

11 11 6.9 3.7e+02 3.3 1.6 1 8 501 508 501 509 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.015	17.1	1.4	1	23	148	170	148	170	0.98
2	11	0.019	1	11.3	2.0	1	23	177	200	177	200	0.97
3	11	0.013	0.71	11.8	1.3	2	21	207	226	206	227	0.91
4	11	0.00065	0.035	15.9	0.5	1	23	234	256	234	256	0.97
5	11	0.0033	0.18	13.7	0.5	1	23	328	351	328	351	0.96
6	11	0.00018	0.0098	17.7	7.0	1	23	357	379	357	379	0.99
7	11	0.0095	0.52	12.3	2.5	1	23	385	408	385	408	0.94
8	11	0.0026	0.14	14.0	0.6	1	21	415	435	415	436	0.91
9	11	0.00038	0.021	16.6	0.3	2	21	445	464	444	465	0.94
10	11	4.1e-07	2.2e-05	26.0	1.2	1	23	473	495	473	495	0.96
11	11	6.9	3.7e+02	3.3	1.6	1	8	501	508	501	509	0.92

Sequence Information

Coding Sequence: ATGTGTGATGGTGTTAAAGAACGAAATTTCAGTAACATAAAATATCTGGGTTTAGCTGCACAAACTTCTGGAGTATTAAGTTATCCACATGAAGTGGAATGTAATGTTGACACCTCAAAATGTTCTGAACAAATACGCATAAGCATTGATGAAGATGAAAATTTACGACAAACGTTTGAGTCAAACGAGGTAAAGCAAGAGAATGACGATAGTAACCATAGTAACGGTTTTGCATATGATGAAAATTTACGAGAAACGTTAGAATCAGATGAAGTGAAACAAGAGAATAATGGTGATAACAGCCTTGCAGTTAGCAATGTAGacacagaaaatttaaaaaatatcagtagtcCGAAACTTAATAATGTTAAAGTGAAAAAGGAGGAATCTTCGAATGAATCCGAATATTCTGATTCGAATGATAGTAAAAAGGCAGTTGCGTATAGTTGTAAATTATGTCTTAAACAATACTCATCCGTGAGCAAGTTAAATAGACATGTTCGCGTTCATTTCCCCGCTAAAAAAACGTACActtgtaaaatatgttttaaatcgTTATTAAATAAGCAACATCTAATATCGCATATTATTAGTAACCATGTTAAAATGAAACCCTGCATTTGTCCTACGTGTAAACGGGGCTTCGTAAACGAGGACAGTCTATATAAACACTCGAAGAAATGTAAGGGACAAAAACCATTCGTTTGTCCTCTGTGCAGTCAAGGATTTATACGCGAGGATAGTTTACAACTTCATTTGCATCAGCACGACGCGAAAATTGTCCAGAAAAATCCCACATTAGATTCTATAGATGATATCGAGAGTTATATACAAGTTGACGAAGAACGCGATAACACTGATCAAATGTTGAAGTTTTTAATCGACGTGAACGATGTTAAAGAACGTAAGCGTGTTAAAGAAGCCGCGGTGACGAaaccaagaaaaaaaacttGGAAACAAAAACGAGTCACGAACGACACATTCACGTGTCGAATTTGTGATCAGACTTTCATAGGCCCTTTCGTCTTCAAACAACATATGTTAAATGAACATCAACAAGAGAACCCTTTCAAATGTGACGTTTGCAAAAAATCATTTCCGAGACATGATCATTTTCTAAGACACTCAAAAACGCACTTAAAAGGAAAACGATTTGCTTGCGATCAgtgtccaaaaaaattttcgtgtgaGTCGCTATTACAGAAACATACAAATGCAAAACACGGTGTGGTCGagaaaaaatttgaatgtaGCATATGCAACAAGTCATTTTCCACCGAGGAGAGGAGAACGTATCATTTGAGGGAGTTCTGTTTAAAAGACCAGCCGCTCCGTTGTAAACGCTGTGAAAAAGAATTTCCTAATAAAGACGAGTTAGTGAAACATTTAAAATTGGCCAACGAATGTTCCCGGCGATTTTTATGTTCAGATTGTGGTCAACGGTTTTCGAGAAACGAATATTTGACCGTGCACATGCGTCGACATACCGGCGAAAGACCGTTCAAGTGCAGTTATTGTGATAAAGGttaa
Protein Sequence: MCDGVKERNFSNIKYLGLAAQTSGVLSYPHEVECNVDTSKCSEQIRISIDEDENLRQTFESNEVKQENDDSNHSNGFAYDENLRETLESDEVKQENNGDNSLAVSNVDTENLKNISSPKLNNVKVKKEESSNESEYSDSNDSKKAVAYSCKLCLKQYSSVSKLNRHVRVHFPAKKTYTCKICFKSLLNKQHLISHIISNHVKMKPCICPTCKRGFVNEDSLYKHSKKCKGQKPFVCPLCSQGFIREDSLQLHLHQHDAKIVQKNPTLDSIDDIESYIQVDEERDNTDQMLKFLIDVNDVKERKRVKEAAVTKPRKKTWKQKRVTNDTFTCRICDQTFIGPFVFKQHMLNEHQQENPFKCDVCKKSFPRHDHFLRHSKTHLKGKRFACDQCPKKFSCESLLQKHTNAKHGVVEKKFECSICNKSFSTEERRTYHLREFCLKDQPLRCKRCEKEFPNKDELVKHLKLANECSRRFLCSDCGQRFSRNEYLTVHMRRHTGERPFKCSYCDKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -